Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002924A_C01 KMC002924A_c01
(1332 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188794.1| hypothetical protein; protein id: At3g21570.1 [... 62 4e-15
dbj|BAC06284.1| OSJNBb0093M23.11 [Oryza sativa (japonica cultiva... 62 2e-08
ref|NP_194930.1| putative protein; protein id: At4g32020.1, supp... 56 4e-07
ref|NP_192113.1| hypothetical protein; protein id: At4g02040.1 [... 57 5e-07
gb|AAK60298.1|AF385706_1 AT4g32020/F10N7_170 [Arabidopsis thalia... 54 2e-06
>ref|NP_188794.1| hypothetical protein; protein id: At3g21570.1 [Arabidopsis
thaliana] gi|11994393|dbj|BAB02352.1|
gene_id:MIL23.14~unknown protein [Arabidopsis thaliana]
Length = 136
Score = 62.4 bits (150), Expect(2) = 4e-15
Identities = 51/142 (35%), Positives = 72/142 (49%), Gaps = 5/142 (3%)
Frame = -1
Query: 987 NRKPVARPEQRKRVVERRPSSDDAKVARGSGWGMEKVTILRRGESLDSQIKSEALKREGD 808
+RKP +P+QR+R SD+ + K + R+GES DS + K
Sbjct: 32 HRKPPLKPDQRRRF-----GSDEFRTTT-------KNIVRRKGESFDSFSNIKVRKYS-- 77
Query: 807 ELVVVGTQRLGPDPEMVPKQIRIMDGQIGFDMYAGSA-FAMSPSPRALPLPSFWKKVAPA 631
PE+ D+YAGS+ FA+SP+P +LPLPSF KK A +
Sbjct: 78 -------------PEVSAD-----------DIYAGSSIFAVSPAPSSLPLPSFSKKKAKS 113
Query: 630 ----VAVDDSATRDLRRLLRLE 577
V++DDSA++DLRRLLRL+
Sbjct: 114 QVVVVSIDDSASQDLRRLLRLK 135
Score = 42.4 bits (98), Expect(2) = 4e-15
Identities = 17/29 (58%), Positives = 23/29 (78%)
Frame = -3
Query: 1117 MGTEILRPQNCLIERIRAPPASFVPAENN 1031
MGTEI+RPQNCL++R+R PA+F + N
Sbjct: 1 MGTEIIRPQNCLVDRMRDSPATFFNSRRN 29
>dbj|BAC06284.1| OSJNBb0093M23.11 [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 62.0 bits (149), Expect = 2e-08
Identities = 29/51 (56%), Positives = 40/51 (77%), Gaps = 1/51 (1%)
Frame = -1
Query: 726 IGFDMYAGSAFAMSPSPRALPLPSF-WKKVAPAVAVDDSATRDLRRLLRLE 577
+ ++YAG AF++SP P ++PLP F ++K A AVDD+ATRDLRR+LRLE
Sbjct: 67 VAVEVYAGPAFSVSPEPSSVPLPQFPFRKAAVTAAVDDAATRDLRRMLRLE 117
>ref|NP_194930.1| putative protein; protein id: At4g32020.1, supported by cDNA:
gi_19548034 [Arabidopsis thaliana]
gi|7485365|pir||T04643 hypothetical protein F10N7.170 -
Arabidopsis thaliana gi|2827634|emb|CAA16587.1| putative
protein [Arabidopsis thaliana]
gi|7270106|emb|CAB79920.1| putative protein [Arabidopsis
thaliana] gi|16974548|gb|AAL31190.1| AT4g32020/F10N7_170
[Arabidopsis thaliana] gi|21928043|gb|AAM78050.1|
AT4g32020/F10N7_170 [Arabidopsis thaliana]
Length = 181
Score = 56.2 bits (134), Expect(2) = 4e-07
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Frame = -1
Query: 993 RANRKPVARPEQRKRV-VERRPSSDDAKVARGSGWGMEKVTILRRGESLDSQIKSEALKR 817
R++ PVA P R V K + + + +V IL+RGE + + ++
Sbjct: 52 RSSSPPVAPPLPPPRAAVSAFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEM 111
Query: 816 EGDELVVVGTQRLGPDPEMVPKQIRIMDGQI-GFDMYAGSAFAMSPSPRALPLPSFWKKV 640
+ T+R+GPDP ++P QIR+ + YAG SP P +PLP+F+ K
Sbjct: 112 SD----LGSTRRIGPDPGLIPGQIRLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTK- 166
Query: 639 APAVAVDDSATRDLRRLLRLE 577
AT DL R+LRL+
Sbjct: 167 --------KATNDLIRILRLD 179
Score = 21.2 bits (43), Expect(2) = 4e-07
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -3
Query: 1117 MGTEILRPQNCL 1082
MG +L PQ+CL
Sbjct: 1 MGVAVLNPQDCL 12
>ref|NP_192113.1| hypothetical protein; protein id: At4g02040.1 [Arabidopsis
thaliana] gi|7486847|pir||T01505 hypothetical protein
T10M13.5 - Arabidopsis thaliana
gi|3912920|gb|AAC78696.1| hypothetical protein
[Arabidopsis thaliana] gi|7268588|emb|CAB80697.1|
hypothetical protein [Arabidopsis thaliana]
Length = 152
Score = 57.4 bits (137), Expect = 5e-07
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Frame = -1
Query: 993 RANRKPVARPEQRKR--VVERRPSSDDAKVARGSGWGMEKVTILRRGESLDS------QI 838
R R P +RK+ V + P+++ V ME+V IL+RGE+L + I
Sbjct: 27 RLCRNSSTAPRRRKQSPTVVKSPAANPNLV-------MEQVKILKRGETLSAFNKNKENI 79
Query: 837 KSEALKR------EGDELVVVGTQRLGPDPEMVPKQIRIMDGQIGFDMYAGSAFAMSPSP 676
S+ +R + +L+V T R+GP+PE++ KQI G +G +AG+ ++SP P
Sbjct: 80 SSDDTRRPVLKMIKDVDLIVSATNRIGPEPEILMKQI----GALGLQSFAGANCSLSPPP 135
Query: 675 RALPLPSF 652
+P+P F
Sbjct: 136 SCVPIPCF 143
>gb|AAK60298.1|AF385706_1 AT4g32020/F10N7_170 [Arabidopsis thaliana]
gi|19548035|gb|AAL87381.1| AT4g32020/F10N7_170
[Arabidopsis thaliana]
Length = 181
Score = 53.9 bits (128), Expect(2) = 2e-06
Identities = 42/141 (29%), Positives = 65/141 (45%), Gaps = 2/141 (1%)
Frame = -1
Query: 993 RANRKPVARPEQRKRV-VERRPSSDDAKVARGSGWGMEKVTILRRGESLDSQIKSEALKR 817
R++ PVA P R V K + + + +V IL+RGE + + ++
Sbjct: 52 RSSSPPVAPPLPPPRAAVSAFVPKGTLKKSLSNTVAVSQVRILKRGEEIPKETSDLVVEM 111
Query: 816 EGDELVVVGTQRLGPDPEMVPKQIRIMDGQI-GFDMYAGSAFAMSPSPRALPLPSFWKKV 640
+ T+R+GPDP ++P QI + + YAG SP P +PLP+F+ K
Sbjct: 112 SD----LGSTRRIGPDPGLIPGQISLSGRKSKSAPFYAGPVTMTSPPPSDVPLPAFFTK- 166
Query: 639 APAVAVDDSATRDLRRLLRLE 577
AT DL R+LRL+
Sbjct: 167 --------KATNDLIRILRLD 179
Score = 21.2 bits (43), Expect(2) = 2e-06
Identities = 7/12 (58%), Positives = 9/12 (74%)
Frame = -3
Query: 1117 MGTEILRPQNCL 1082
MG +L PQ+CL
Sbjct: 1 MGVAVLNPQDCL 12
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,282,743,270
Number of Sequences: 1393205
Number of extensions: 32864571
Number of successful extensions: 140463
Number of sequences better than 10.0: 731
Number of HSP's better than 10.0 without gapping: 107004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135671
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 86587097189
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
