Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002923A_C01 KMC002923A_c01
(379 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_592981.1| hypothetical ankyrin repeat-containing DHHC zin... 32 1.5
gb|AAF16867.1|AF104916_1 protein mannosyltransferase [Candida al... 31 3.4
ref|XP_138020.1| similar to modifier of cell adhesion [Homo sapi... 30 5.7
ref|NP_041277.1| polyprotein [Poliovirus] gi|130533|sp|P03300|PO... 30 9.8
gb|AAM09806.1|AF405690_1 polyprotein [Human poliovirus 1] 30 9.8
>ref|NP_592981.1| hypothetical ankyrin repeat-containing DHHC zinc finger protein
[Schizosaccharomyces pombe]
gi|1175373|sp|Q09701|YA2A_SCHPO Hypothetical protein
C2F7.10 in chromosome I gi|2130379|pir||S58154
hypothetical protein SPAC2F7.10 - fission yeast
(Schizosaccharomyces pombe) gi|1052793|emb|CAA90497.1|
hypothetical ankyrin repeat-containing DHHC zinc finger
protein [Schizosaccharomyces pombe]
Length = 642
Score = 32.3 bits (72), Expect = 1.5
Identities = 29/108 (26%), Positives = 48/108 (43%), Gaps = 16/108 (14%)
Frame = -3
Query: 308 FCLISQYKWETKFFLWSKPSTFILSICNEIVKLILKL*HNTYFXLEPMFILYSFVYLVVC 129
FC +S + FF FI+SIC ++ LI + P++I ++F Y+ C
Sbjct: 259 FCFLSSFIITGVFF-------FIMSICPMVISLI----------IAPLWIYFTFKYITTC 301
Query: 128 ------ILHY---------*FTSRYYDDHCEVWSDG*L-LIPSTIPIK 33
I+H+ F+S ++ VW L ++P T+PIK
Sbjct: 302 IHANIDIVHFYLETPFLAGIFSSIFF----WVWCHSLLYIVPKTLPIK 345
>gb|AAF16867.1|AF104916_1 protein mannosyltransferase [Candida albicans]
Length = 826
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Frame = -3
Query: 245 FILSICNEIVKLILKL*---HNTYFXLEPMFILYSFVYLVVCILHY*FTSRYYDDHCEVW 75
F + + IV IL L HN F ++YS +YLV+CI + Y+ D VW
Sbjct: 760 FAIFVAGFIVDAILNLDFSYHNNKFQYIFKVVIYSTLYLVICISFW-----YFKDLSSVW 814
Query: 74 SDG*LLI 54
L+I
Sbjct: 815 RGHRLII 821
>ref|XP_138020.1| similar to modifier of cell adhesion [Homo sapiens] [Mus musculus]
Length = 372
Score = 30.4 bits (67), Expect = 5.7
Identities = 18/49 (36%), Positives = 28/49 (56%)
Frame = +1
Query: 145 TKLYRMNIGSXLKYVLC*SLRINLTISLHILRMNVDGLLHKKNLVSHLY 291
T+LYR+++GS LR ++ I++HI+R+ G KKN S Y
Sbjct: 229 TELYRLDLGSS-------ELRKDIYITVHIIRIGRMGAGEKKNACSVQY 270
>ref|NP_041277.1| polyprotein [Poliovirus] gi|130533|sp|P03300|POLH_POL1M Genome
polyprotein [Contains: Coat proteins VP1 TO VP4; Core
proteins P2A TO P2C, P3A; Genome-linked protein VPG;
Picornain 3C (Protease 3C) (P3C); RNA-directed RNA
polymerase P3D ] (Version 2) gi|74424|pir||GNNY2P genome
polyprotein (version 2) - human poliovirus 1 (strain
Mahoney) gi|61253|emb|CAA24461.1| polyprotein [Human
poliovirus 1 Mahoney]
Length = 2209
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 222 FITYTEDECGWFTPQKKLGFPLI-LGNQTKKSPQRVH 329
+ T ++ E W P K++G+P+I ++TK P H
Sbjct: 1743 YFTQSQGEIQWMRPSKEVGYPIINAPSKTKLEPSAFH 1779
>gb|AAM09806.1|AF405690_1 polyprotein [Human poliovirus 1]
Length = 2209
Score = 29.6 bits (65), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 222 FITYTEDECGWFTPQKKLGFPLI-LGNQTKKSPQRVH 329
+ T ++ E W P K++G+P+I ++TK P H
Sbjct: 1743 YFTQSQGEIQWMRPSKEVGYPIINAPSKTKLEPSAFH 1779
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 326,582,635
Number of Sequences: 1393205
Number of extensions: 6314247
Number of successful extensions: 13122
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13119
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
