Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002918A_C01 KMC002918A_c01
(411 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565438.1| putative ribosomal protein L6; protein id: At2g... 39 0.012
pir||H84563 probable ribosomal protein L6 [imported] - Arabidops... 39 0.012
gb|EAA23114.1| LSU ribosomal protein L6P [Fusobacterium nucleatu... 31 4.2
ref|NP_761449.1| Predicted ATP-dependent protease [Vibrio vulnif... 30 5.4
gb|AAO32311.1| putative chloroplast 50S ribosomal protein L6 [Or... 30 9.3
>ref|NP_565438.1| putative ribosomal protein L6; protein id: At2g18400.1, supported
by cDNA: 692., supported by cDNA: gi_14994246
[Arabidopsis thaliana] gi|14994247|gb|AAK73258.1|
putative ribosomal protein L6 [Arabidopsis thaliana]
gi|20197811|gb|AAD15497.2| putative ribosomal protein L6
[Arabidopsis thaliana] gi|21594402|gb|AAM66004.1|
putative ribosomal protein L6 [Arabidopsis thaliana]
Length = 102
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 411 KGIMYVDEVIKKKQGKKSK 355
KGIMY DEV+KKKQGKKSK
Sbjct: 84 KGIMYTDEVVKKKQGKKSK 102
>pir||H84563 probable ribosomal protein L6 [imported] - Arabidopsis thaliana
Length = 144
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 411 KGIMYVDEVIKKKQGKKSK 355
KGIMY DEV+KKKQGKKSK
Sbjct: 126 KGIMYTDEVVKKKQGKKSK 144
>gb|EAA23114.1| LSU ribosomal protein L6P [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 178
Score = 30.8 bits (68), Expect = 4.2
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -1
Query: 411 KGIMYVDEVIKKKQGKKSK 355
KG+ Y DE I++K+GKKSK
Sbjct: 160 KGVKYADEHIRRKEGKKSK 178
>ref|NP_761449.1| Predicted ATP-dependent protease [Vibrio vulnificus CMCP6]
gi|27362070|gb|AAO10976.1|AE016805_233 Predicted
ATP-dependent protease [Vibrio vulnificus CMCP6]
Length = 547
Score = 30.4 bits (67), Expect = 5.4
Identities = 20/58 (34%), Positives = 35/58 (59%), Gaps = 2/58 (3%)
Frame = -3
Query: 304 LARLHLQNCSL*PMNKFSVGILE--LSIMDNQVLALK*YSLSCSHMIDTYRLEFNENV 137
+AR + NC P+ + G++E L+ +D +++ LK +LS SH+ D Y+L N +V
Sbjct: 51 MARFLVINCCDNPIYR---GLVEEGLNSIDPELVVLKTETLSPSHLFDRYKLNANGDV 105
>gb|AAO32311.1| putative chloroplast 50S ribosomal protein L6 [Oryza sativa
(japonica cultivar-group)]
Length = 226
Score = 29.6 bits (65), Expect = 9.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 411 KGIMYVDEVIKKKQGKKSK 355
KGI Y DEV+++K+GK K
Sbjct: 206 KGIRYADEVVRRKEGKAGK 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,938,861
Number of Sequences: 1393205
Number of extensions: 5795782
Number of successful extensions: 8476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8476
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
