Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002917A_C01 KMC002917A_c01
(407 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_745637.1| ISPpu14, transposase Orf2 [Pseudomonas putida K... 31 3.2
ref|XP_148652.1| hypothetical protein XP_148652 [Mus musculus] g... 30 7.1
pir||A96812 protein F3F9.18 [imported] - Arabidopsis thaliana gi... 30 9.3
ref|NP_177951.1| unknown protein; protein id: At1g78280.1 [Arabi... 30 9.3
>ref|NP_745637.1| ISPpu14, transposase Orf2 [Pseudomonas putida KT2440]
gi|26990670|ref|NP_746095.1| ISPpu14, transposase Orf2
[Pseudomonas putida KT2440] gi|26990685|ref|NP_746110.1|
ISPpu14, transposase Orf2 [Pseudomonas putida KT2440]
gi|26991125|ref|NP_746550.1| ISPpu14, transposase Orf2
[Pseudomonas putida KT2440]
gi|24985155|gb|AAN69101.1|AE016543_10 ISPpu14,
transposase Orf2 [Pseudomonas putida KT2440]
gi|24985659|gb|AAN69559.1|AE016589_8 ISPpu14,
transposase Orf2 [Pseudomonas putida KT2440]
gi|24985676|gb|AAN69574.1|AE016591_2 ISPpu14,
transposase Orf2 [Pseudomonas putida KT2440]
gi|24986165|gb|AAN70014.1|AE016640_2 ISPpu14,
transposase Orf2 [Pseudomonas putida KT2440]
Length = 111
Score = 31.2 bits (69), Expect = 3.2
Identities = 13/44 (29%), Positives = 22/44 (49%)
Frame = +3
Query: 210 CEYLNLQKHCDNIQIMVHQGMKLL*IYRRACAGHITYHGSHHGC 341
C YL + + ++++VH G+ + RR G + G HGC
Sbjct: 38 CAYLFANRRANRMKVLVHDGVGVWLAARRLNQGKFHWPGIRHGC 81
>ref|XP_148652.1| hypothetical protein XP_148652 [Mus musculus]
gi|28493986|ref|XP_193837.2| similar to neuronal protein
[Homo sapiens] [Mus musculus]
Length = 93
Score = 30.0 bits (66), Expect = 7.1
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = -2
Query: 202 LSKEAPLCGISIRASTFC---VALRFVGSSCSSCPKIMHCLL*ALYLC 68
+S + P C + A+TFC R S CPK++ CL+ L++C
Sbjct: 34 ISAQTPRCLLLPTAATFCSFRTMQRLPFLSDLLCPKVLVCLIIYLFIC 81
>pir||A96812 protein F3F9.18 [imported] - Arabidopsis thaliana
gi|8052543|gb|AAF71807.1|AC013430_16 F3F9.18
[Arabidopsis thaliana]
Length = 919
Score = 29.6 bits (65), Expect = 9.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 227 SEALRQHTNYGSPGDETFVNLQESVRWPHYISR 325
++ LR+H N G P ++F +L V WP+ I++
Sbjct: 594 NKTLREHKNQGKPAPDSFGSLSSHV-WPYIITK 625
>ref|NP_177951.1| unknown protein; protein id: At1g78280.1 [Arabidopsis thaliana]
Length = 889
Score = 29.6 bits (65), Expect = 9.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 227 SEALRQHTNYGSPGDETFVNLQESVRWPHYISR 325
++ LR+H N G P ++F +L V WP+ I++
Sbjct: 590 NKTLREHKNQGKPAPDSFGSLSSHV-WPYIITK 621
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,158,880
Number of Sequences: 1393205
Number of extensions: 6212682
Number of successful extensions: 17021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17003
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
