Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002914A_C02 KMC002914A_c02
(729 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM54670.1|AF514416_1 histone H1 [Lathyrus aphaca] 163 3e-39
gb|AAK29452.1|AF352249_1 histone H1 [Lathyrus sativus] 162 6e-39
gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus] 162 6e-39
gb|AAK29451.1|AF352248_1 histone H1 [Pisum sativum] 161 1e-38
gb|AAM54671.1|AF514417_1 histone H1 [Pisum sativum subsp. abyssi... 157 2e-37
>gb|AAM54670.1|AF514416_1 histone H1 [Lathyrus aphaca]
Length = 298
Score = 163 bits (412), Expect = 3e-39
Identities = 107/159 (67%), Positives = 115/159 (72%), Gaps = 6/159 (3%)
Frame = -3
Query: 724 AAAATKAKAKPAPKSKAAA-TKTTAKAKPAAAAKP--KAKPAAKAKPAAK-AKAVAAPAK 557
A AATK+KAKPA K+K AA K AKAKPAA AKP KAKPAAKAKPAAK AKAVAA
Sbjct: 149 AKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAVAAKPA 208
Query: 556 AKASPA-KPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPP 380
AKA PA KPKA AK+K P KAKPAAKAKPAA+PAKA+RTSTRT+P K P
Sbjct: 209 AKAKPAAKPKAAAKAK---------PAAKAKPAAKAKPAAKPAKAARTSTRTSPAAKAPA 259
Query: 379 PPKPAPKKAATPVKKAPAK-SGKAKTVKSPAKRTAPPRG 266
P K A KKAA PVKK P K + KAKT KSPAK+ A RG
Sbjct: 260 P-KVAVKKAA-PVKKTPVKAAAKAKTAKSPAKKAAAKRG 296
Score = 75.1 bits (183), Expect = 9e-13
Identities = 48/113 (42%), Positives = 59/113 (51%), Gaps = 3/113 (2%)
Frame = -3
Query: 604 KAKPAAKAKAVAAPAKAKASPAKPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAAR--PA 431
KA AK+ AA K + +KPKAK K+K A + P KAKPAAKAKPAA+ PA
Sbjct: 120 KASYKLPAKSTAAKPAKKPAGSKPKAKPKAKAATKSKAKPAA-KAKPAAKAKPAAKAKPA 178
Query: 430 KASRTSTRTTPGKKVPPPPKPAPKKAATPVKKA-PAKSGKAKTVKSPAKRTAP 275
++ + + P K P KPA AA P KA PA KA PA + P
Sbjct: 179 AKAKPAAKAKPAAKAKPAAKPAKAVAAKPAAKAKPAAKPKAAAKAKPAAKAKP 231
Score = 64.3 bits (155), Expect = 2e-09
Identities = 52/105 (49%), Positives = 55/105 (51%), Gaps = 5/105 (4%)
Frame = -3
Query: 727 PAAAATKA-KAKPAPKSKAAAT-KTTAKAKPAAAAKP--KAKPAAKAKPAAKAKAVAAP- 563
PAA KA AKPA K+K AA K AKAKPAA AKP KAKPAAK AA+ +P
Sbjct: 195 PAAKPAKAVAAKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPA 254
Query: 562 AKAKASPAKPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAK 428
AKA A K A K P K AAKAK A PAK
Sbjct: 255 AKAPAPKVAVKKAAPVKKTP----------VKAAAKAKTAKSPAK 289
Score = 48.9 bits (115), Expect = 7e-05
Identities = 41/116 (35%), Positives = 50/116 (42%), Gaps = 8/116 (6%)
Frame = -3
Query: 580 KAVAAPAKAKASPAKPKAKAKSKTA-PRMNVNPPVPKAKPAAKA--KPAARPAKASRTST 410
K + A K A K AKS A P PKAKP AKA K A+PA ++ +
Sbjct: 108 KKLVASGKLVKVKASYKLPAKSTAAKPAKKPAGSKPKAKPKAKAATKSKAKPAAKAKPAA 167
Query: 409 RTTPGKKVPPPPKPAPKKAATPVKKA-----PAKSGKAKTVKSPAKRTAPPRGGRK 257
+ P K P K P A P KA PAK+ AK + AK A P+ K
Sbjct: 168 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAVAAKPA-AKAKPAAKPKAAAK 222
>gb|AAK29452.1|AF352249_1 histone H1 [Lathyrus sativus]
Length = 295
Score = 162 bits (409), Expect = 6e-39
Identities = 106/159 (66%), Positives = 114/159 (71%), Gaps = 6/159 (3%)
Frame = -3
Query: 724 AAAATKAKAKPAPKSKAAA-TKTTAKAKPAAAAKP--KAKPAAKAKPAAK-AKAVAAPAK 557
A AATK+KAKPA K+K AA K AKAKPAA AKP KAKPAAKAKPAAK AK VAA
Sbjct: 146 AKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAKPA 205
Query: 556 AKASPA-KPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPP 380
AKA PA KPKA AK+K P KAKPAAKAKPAA+PAKA+RTSTRT+P K
Sbjct: 206 AKAKPAAKPKAAAKAK---------PAAKAKPAAKAKPAAKPAKAARTSTRTSPAAKAAA 256
Query: 379 PPKPAPKKAATPVKKAPAK-SGKAKTVKSPAKRTAPPRG 266
P KPA KKAA PVKK P K + KAKT KSPAK+ A RG
Sbjct: 257 P-KPAVKKAA-PVKKTPVKAAAKAKTAKSPAKKAAAKRG 293
Score = 73.9 bits (180), Expect = 2e-12
Identities = 59/137 (43%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Frame = -3
Query: 679 KAAATKTTAK-AKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKASPAKPKAKAKSKTAP 503
K A T AK AK AA+K KAKP AKA +KAK A+ AKP AKAK
Sbjct: 121 KLPAKSTAAKPAKKPAASKSKAKPKAKAATKSKAKP--------AAKAKPAAKAK----- 167
Query: 502 RMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKA-PA 326
P KAKPAAKAKPAA+ P K P KPA AA P KA PA
Sbjct: 168 ------PAAKAKPAAKAKPAAK----------AKPAAKAKPAAKPAKTVAAKPAAKAKPA 211
Query: 325 KSGKAKTVKSPAKRTAP 275
KA PA + P
Sbjct: 212 AKPKAAAKAKPAAKAKP 228
Score = 48.9 bits (115), Expect = 7e-05
Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Frame = -3
Query: 616 KPAAKAKPAAKAKAVAAPAKAKAS-PAKPKAKAKSKTAPRMNVNPPVPKAKPAAKA--KP 446
K A K + PAK+ A+ PAK A +KSK AKP AKA K
Sbjct: 106 KLVASGKLVKVKASYKLPAKSTAAKPAKKPAASKSK-------------AKPKAKAATKS 152
Query: 445 AARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKAPAKSGKAKTV----KSPAKRTA 278
A+PA ++ + + P K P K P A P KA + AKTV + AK A
Sbjct: 153 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAKPAAKAKPAA 212
Query: 277 PPRGGRK 257
P+ K
Sbjct: 213 KPKAAAK 219
>gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus]
Length = 306
Score = 162 bits (409), Expect = 6e-39
Identities = 106/159 (66%), Positives = 114/159 (71%), Gaps = 6/159 (3%)
Frame = -3
Query: 724 AAAATKAKAKPAPKSKAAA-TKTTAKAKPAAAAKP--KAKPAAKAKPAAK-AKAVAAPAK 557
A AATK+KAKPA K+K AA K AKAKPAA AKP KAKPAAKAKPAAK AK VAA
Sbjct: 157 AKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAKPA 216
Query: 556 AKASPA-KPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPP 380
AKA PA KPKA AK+K P KAKPAAKAKPAA+PAKA+RTSTRT+P K
Sbjct: 217 AKAKPAAKPKAAAKAK---------PAAKAKPAAKAKPAAKPAKAARTSTRTSPAAKAAA 267
Query: 379 PPKPAPKKAATPVKKAPAK-SGKAKTVKSPAKRTAPPRG 266
P KPA KKAA PVKK P K + KAKT KSPAK+ A RG
Sbjct: 268 P-KPAVKKAA-PVKKTPVKAAAKAKTAKSPAKKAAAKRG 304
Score = 73.6 bits (179), Expect = 3e-12
Identities = 57/148 (38%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Frame = -3
Query: 709 KAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKASPAKPK 530
K K P+ K + K KA AK A AK PA +K S AKPK
Sbjct: 99 KHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKLPAKSTA-AKPAKKPAASK-SKAKPK 156
Query: 529 AKAKSKTAPRMNVNPPVPKAKPAAKAKPA--ARPAKASRTSTRTTPGKKVPPPPKPAPKK 356
AKA +K+ + P KAKPAAKAKPA A+PA ++ + + P K P KPA
Sbjct: 157 AKAATKSKAK-----PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTV 211
Query: 355 AATPVKKA-PAKSGKAKTVKSPAKRTAP 275
AA P KA PA KA PA + P
Sbjct: 212 AAKPAAKAKPAAKPKAAAKAKPAAKAKP 239
Score = 48.9 bits (115), Expect = 7e-05
Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Frame = -3
Query: 616 KPAAKAKPAAKAKAVAAPAKAKAS-PAKPKAKAKSKTAPRMNVNPPVPKAKPAAKA--KP 446
K A K + PAK+ A+ PAK A +KSK AKP AKA K
Sbjct: 117 KLVASGKLVKVKASYKLPAKSTAAKPAKKPAASKSK-------------AKPKAKAATKS 163
Query: 445 AARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKAPAKSGKAKTV----KSPAKRTA 278
A+PA ++ + + P K P K P A P KA + AKTV + AK A
Sbjct: 164 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAKPAAKAKPAA 223
Query: 277 PPRGGRK 257
P+ K
Sbjct: 224 KPKAAAK 230
>gb|AAK29451.1|AF352248_1 histone H1 [Pisum sativum]
Length = 301
Score = 161 bits (407), Expect = 1e-38
Identities = 102/158 (64%), Positives = 110/158 (69%), Gaps = 5/158 (3%)
Frame = -3
Query: 724 AAAATKAKAKPAPKSK-AAATKTTAKAKPAAAAKP--KAKPAAKAKPAAKAKAVAAPAKA 554
A AATK+KAKPA K+K AA K AKAKPAA AKP KAKPAAKAKPAAKAK A P K
Sbjct: 146 AKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKT 205
Query: 553 KASPAKPKAKAKSKTAPRMNVN-PPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPPP 377
A AKP AKAK P+ P KAKPAAKAKPAA+PAKA+RTSTRT+P
Sbjct: 206 AA--AKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPA-AAAAA 262
Query: 376 PKPAPKKAATPVKKAPAK-SGKAKTVKSPAKRTAPPRG 266
PKPA KKAA PVKK P K + KAKT KSPAK+ A RG
Sbjct: 263 PKPAAKKAA-PVKKTPVKAAAKAKTAKSPAKKAAAKRG 299
Score = 77.0 bits (188), Expect = 2e-13
Identities = 60/139 (43%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Frame = -3
Query: 673 AATKTTAKAKPAAAAKPKAKPAA---KAKPAAKAKAVAAPAKAKASPAKPKAKAKSKTAP 503
A+ K AK+ +AAKP KPAA KAKP AKA A S AKP AKAK
Sbjct: 118 ASYKLPAKS---SAAKPAKKPAAAKSKAKPKAKA--------ATKSKAKPAAKAK----- 161
Query: 502 RMNVNPPVPKAKPAAKAKPA--ARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKA- 332
P KAKPAAKAKPA A+PA ++ + + P K P KP AA P KA
Sbjct: 162 ------PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAK 215
Query: 331 PAKSGKAKTVKSPAKRTAP 275
PA KA PA + P
Sbjct: 216 PAAKPKAAAKAKPAAKAKP 234
Score = 53.9 bits (128), Expect = 2e-06
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Frame = -3
Query: 616 KPAAKAKPAAKAKAVAAPAKAKAS-PAKPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPA- 443
K A K + PAK+ A+ PAK A AKSK P+ KA +KAKPA
Sbjct: 106 KLVASGKLVKVKASYKLPAKSSAAKPAKKPAAAKSKAKPKA-------KAATKSKAKPAA 158
Query: 442 -ARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKA-----PAKSGKAKTVKSPAKRT 281
A+PA ++ + + P K P K P A P KA P K+ AK + AK
Sbjct: 159 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPA-AKAKPA 217
Query: 280 APPRGGRK 257
A P+ K
Sbjct: 218 AKPKAAAK 225
>gb|AAM54671.1|AF514417_1 histone H1 [Pisum sativum subsp. abyssinicum]
gi|21465097|gb|AAM54672.1|AF514418_1 histone H1 [Pisum
fulvum]
Length = 295
Score = 157 bits (396), Expect = 2e-37
Identities = 103/159 (64%), Positives = 111/159 (69%), Gaps = 6/159 (3%)
Frame = -3
Query: 724 AAAATKAKAKPAPKSKAAA-TKTTAKAKPAAAAKP--KAKPAAKAKPAAK-AKAVAAPAK 557
A AATK+KAKPA K+K AA K AKAKPAA AKP KAKPAAKAKPAAK K AA
Sbjct: 146 AKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPA 205
Query: 556 AKASPA-KPKAKAKSKTAPRMNVNPPVPKAKPAAKAKPAARPAKASRTSTRTTPGKKVPP 380
AKA PA KPKA AK+K P KAKPAAKAKPAA+PAKA+RTSTRT+P
Sbjct: 206 AKAKPAAKPKAAAKAK---------PAAKAKPAAKAKPAAKPAKAARTSTRTSPAAAAAA 256
Query: 379 PPKPAPKKAATPVKKAPAK-SGKAKTVKSPAKRTAPPRG 266
P KPA KKAA PVKK P K + KAKT KSPAK+ A RG
Sbjct: 257 P-KPAAKKAA-PVKKTPVKAAAKAKTAKSPAKKAAAKRG 293
Score = 67.0 bits (162), Expect = 3e-10
Identities = 56/154 (36%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Frame = -3
Query: 709 KAKAKPAPKSKAAATKTTAKAKPAAAAKPKAKPAAKAKPAAKAKAVAAPAKAKASPAKPK 530
K K P+ K + K KA AK +A AK PA AK S AKPK
Sbjct: 88 KHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKLPAKSSA-AKPAKKPAAAK-SKAKPK 145
Query: 529 AKAKSKTAPRMNVNPPVPKAKPAAKAKPA--------ARPAKASRTSTRTTPGKKVPPPP 374
AKA +K+ KAKPAAKAKPA A+PA ++ + + P K P
Sbjct: 146 AKAATKS-----------KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA 194
Query: 373 KPAPKKAATPVKKA-PAKSGKAKTVKSPAKRTAP 275
KP AA P KA PA KA PA + P
Sbjct: 195 KPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKP 228
Score = 48.5 bits (114), Expect = 9e-05
Identities = 43/128 (33%), Positives = 54/128 (41%), Gaps = 8/128 (6%)
Frame = -3
Query: 616 KPAAKAKPAAKAKAVAAPAKAKAS-PAKPKAKAKSKTAPRMNVNPPVPKAKPAAKA--KP 446
K A K + PAK+ A+ PAK A AKSK AKP AKA K
Sbjct: 106 KLVASGKLVKVKASYKLPAKSSAAKPAKKPAAAKSK-------------AKPKAKAATKS 152
Query: 445 AARPAKASRTSTRTTPGKKVPPPPKPAPKKAATPVKKA-----PAKSGKAKTVKSPAKRT 281
A+PA ++ + + P K P K P A P KA P K+ AK + AK
Sbjct: 153 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPA-AKAKPA 211
Query: 280 APPRGGRK 257
A P+ K
Sbjct: 212 AKPKAAAK 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 667,472,043
Number of Sequences: 1393205
Number of extensions: 18092994
Number of successful extensions: 287228
Number of sequences better than 10.0: 10340
Number of HSP's better than 10.0 without gapping: 106093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199311
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
