Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002913A_C01 KMC002913A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA90624.1| Similar to Arabidopsis thaliana DNA chromosome 4... 53 3e-06
gb|AAL11573.1|AF424579_1 AT4g16570/dl4310w [Arabidopsis thaliana... 44 0.001
ref|NP_567508.1| expressed protein; protein id: At4g16570.1, sup... 44 0.001
ref|NP_663379.1| cDNA sequence BC006705; similar to Protein argi... 34 0.93
ref|NP_061896.1| hypothetical protein FLJ10640; KIAA1933 protein... 34 1.2
>dbj|BAA90624.1| Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I contig
fragment No. 6; calcium channel protein alpha-1 chain
isoform A - rat. (Z97341) [Oryza sativa (japonica
cultivar-group)]
Length = 589
Score = 52.8 bits (125), Expect = 3e-06
Identities = 20/26 (76%), Positives = 24/26 (91%)
Frame = -1
Query: 211 VDLLIAEPFYLGHDGMLPWQNLRFWY 134
V+LL+ EPFYLG +GMLPWQNLRFW+
Sbjct: 459 VNLLVGEPFYLGSEGMLPWQNLRFWF 484
>gb|AAL11573.1|AF424579_1 AT4g16570/dl4310w [Arabidopsis thaliana] gi|23308405|gb|AAN18172.1|
At4g16570/dl4310w [Arabidopsis thaliana]
Length = 457
Score = 43.9 bits (102), Expect = 0.001
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -1
Query: 211 VDLLIAEPFYLGHDGMLPWQNLRFW 137
+DLLI EP+Y G + LPWQNLRFW
Sbjct: 246 IDLLIGEPYYSGLENGLPWQNLRFW 270
>ref|NP_567508.1| expressed protein; protein id: At4g16570.1, supported by cDNA:
gi_15983409 [Arabidopsis thaliana]
Length = 724
Score = 43.9 bits (102), Expect = 0.001
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -1
Query: 211 VDLLIAEPFYLGHDGMLPWQNLRFW 137
+DLLI EP+Y G + LPWQNLRFW
Sbjct: 513 IDLLIGEPYYSGLENGLPWQNLRFW 537
>ref|NP_663379.1| cDNA sequence BC006705; similar to Protein arginine
N-methyltransferase [Mus musculus]
gi|20137388|sp|Q922X9|ANMX_MOUSE Protein arginine
N-methyltransferase gi|13879453|gb|AAH06705.1| Unknown
(protein for MGC:7929) [Mus musculus]
Length = 692
Score = 34.3 bits (77), Expect = 0.93
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 211 VDLLIAEPFYLGHDGMLPWQNLRFWY--TSI*PVPCPG 104
V LL+ EPF+ +LPW NL FWY TS+ PG
Sbjct: 472 VSLLLGEPFFT--TSLLPWHNLYFWYVRTSVDQHLAPG 507
>ref|NP_061896.1| hypothetical protein FLJ10640; KIAA1933 protein [Homo sapiens]
gi|20137529|sp|Q9NVM4|ANMX_HUMAN Protein arginine
N-methyltransferase gi|7022797|dbj|BAA91726.1| unnamed
protein product [Homo sapiens]
gi|12652789|gb|AAH00146.1|AAH00146 hypothetical protein
[Homo sapiens]
Length = 692
Score = 33.9 bits (76), Expect = 1.2
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -1
Query: 211 VDLLIAEPFYLGHDGMLPWQNLRFWY 134
V LL+ EPF+ +LPW NL FWY
Sbjct: 472 VSLLLGEPFFT--TSLLPWHNLYFWY 495
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,590,588
Number of Sequences: 1393205
Number of extensions: 9886586
Number of successful extensions: 21685
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21671
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
