Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002906A_C01 KMC002906A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H84617 probable nucleotide-binding protein [imported] - Ara... 39 0.015
ref|NP_565543.1| putative nucleotide-binding protein; protein id... 39 0.015
gb|AAM19136.1|AC103891_16 Putative nucleotide binding protein [O... 37 0.044
dbj|BAB89927.1| putative GTP-binding protein [Oryza sativa (japo... 35 0.17
ref|NP_196709.1| putative GTP-binding protein; protein id: At5g1... 34 0.38
>pir||H84617 probable nucleotide-binding protein [imported] - Arabidopsis
thaliana
Length = 219
Score = 38.9 bits (89), Expect = 0.015
Identities = 15/18 (83%), Positives = 18/18 (99%)
Frame = -3
Query: 411 GRDDLLLHVSQLRNYWDR 358
GRD+LLLH+SQLRNYWD+
Sbjct: 202 GRDELLLHMSQLRNYWDQ 219
>ref|NP_565543.1| putative nucleotide-binding protein; protein id: At2g22870.1,
supported by cDNA: 33511. [Arabidopsis thaliana]
gi|21903474|sp|O81004|YB87_ARATH Hypothetical
GTP-binding protein At2g22870 gi|20197273|gb|AAC32434.2|
putative nucleotide-binding protein [Arabidopsis
thaliana] gi|21592880|gb|AAM64830.1| putative
nucleotide-binding protein [Arabidopsis thaliana]
Length = 300
Score = 38.9 bits (89), Expect = 0.015
Identities = 15/18 (83%), Positives = 18/18 (99%)
Frame = -3
Query: 411 GRDDLLLHVSQLRNYWDR 358
GRD+LLLH+SQLRNYWD+
Sbjct: 283 GRDELLLHMSQLRNYWDQ 300
>gb|AAM19136.1|AC103891_16 Putative nucleotide binding protein [Oryza sativa (japonica
cultivar-group)] gi|27311248|gb|AAO00694.1| Putative
nucleotide binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 255
Score = 37.4 bits (85), Expect = 0.044
Identities = 15/17 (88%), Positives = 16/17 (93%)
Frame = -3
Query: 411 GRDDLLLHVSQLRNYWD 361
GRD LLLH+SQLRNYWD
Sbjct: 232 GRDGLLLHMSQLRNYWD 248
>dbj|BAB89927.1| putative GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 307
Score = 35.4 bits (80), Expect = 0.17
Identities = 13/16 (81%), Positives = 16/16 (99%)
Frame = -3
Query: 411 GRDDLLLHVSQLRNYW 364
GRD++LLH+SQLRNYW
Sbjct: 289 GRDEILLHMSQLRNYW 304
>ref|NP_196709.1| putative GTP-binding protein; protein id: At5g11480.1, supported by
cDNA: 32716., supported by cDNA: gi_16648723
[Arabidopsis thaliana] gi|11358649|pir||T48507 probable
GTP-binding protein - Arabidopsis thaliana
gi|7573405|emb|CAB87708.1| putative GTP-binding protein
[Arabidopsis thaliana] gi|16648724|gb|AAL25554.1|
AT5g11480/F15N18_70 [Arabidopsis thaliana]
gi|23505999|gb|AAN28859.1| At5g11480/F15N18_70
[Arabidopsis thaliana]
Length = 318
Score = 34.3 bits (77), Expect = 0.38
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = -3
Query: 411 GRDDLLLHVSQLRNYW 364
GRD++LLH++QLRNYW
Sbjct: 300 GRDEILLHMAQLRNYW 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,494,864
Number of Sequences: 1393205
Number of extensions: 5809860
Number of successful extensions: 10690
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10690
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
