Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002905A_C01 KMC002905A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01402|NDK2_SPIOL Nucleoside diphosphate kinase II, chloropla... 178 3e-44
sp|P47923|NDK2_PEA Nucleoside diphosphate kinase II, chloroplast... 175 3e-43
dbj|BAC05487.1| nucloside diphosphate kinase 2 [Brassica rapa] 174 7e-43
dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum] 172 2e-42
ref|NP_568970.1| nucleotide diphosphate kinase Ia (emb|CAB58230.... 170 1e-41
>sp|Q01402|NDK2_SPIOL Nucleoside diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) gi|282832|pir||S28226
nucleoside-diphosphate kinase (EC 2.7.4.6) II precursor,
chloroplast - spinach gi|218273|dbj|BAA02018.1|
nucleoside diphosphate kinase II [Spinacia oleracea]
Length = 233
Score = 178 bits (452), Expect = 3e-44
Identities = 81/90 (90%), Positives = 86/90 (95%)
Frame = -3
Query: 515 KLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDS 336
KLIDYITSGPVVCMAWEGVGVVAS+RKLIGATDPLQAEPGTIRGDLAVQTGRN+VHGSDS
Sbjct: 144 KLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDS 203
Query: 335 PENGKREIALWFKEGELCEWTPVLTPWLRE 246
P+NGKREI LWFKEGE+C+WTP PWLRE
Sbjct: 204 PDNGKREIGLWFKEGEICQWTPAQAPWLRE 233
>sp|P47923|NDK2_PEA Nucleoside diphosphate kinase II, chloroplast precursor (NDK II)
(NDP kinase II) (NDPK II) gi|1084377|pir||S52785
nucleoside-diphosphate kinase (EC 2.7.4.6) II precursor
- garden pea gi|758644|emb|CAA86071.1| nucleoside
diphosphate kinase II, precursor [Pisum sativum]
Length = 230
Score = 175 bits (443), Expect = 3e-43
Identities = 82/90 (91%), Positives = 85/90 (94%)
Frame = -3
Query: 515 KLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDS 336
KLI+YITSGPVV MAWEGVGVV SARKLIGATDPLQAEPGTIRGD AVQTGRNI+HGSDS
Sbjct: 141 KLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDS 200
Query: 335 PENGKREIALWFKEGELCEWTPVLTPWLRE 246
PENG+REIALWFKEGELCEWTPV PWLRE
Sbjct: 201 PENGEREIALWFKEGELCEWTPVQEPWLRE 230
>dbj|BAC05487.1| nucloside diphosphate kinase 2 [Brassica rapa]
Length = 230
Score = 174 bits (440), Expect = 7e-43
Identities = 82/89 (92%), Positives = 84/89 (94%)
Frame = -3
Query: 512 LIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 333
LI+YITSGPVVCMAWEGVGVVASARK+IG TDPLQAEPGTIRGDLAVQTGRNIVHGSDSP
Sbjct: 142 LIEYITSGPVVCMAWEGVGVVASARKMIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 201
Query: 332 ENGKREIALWFKEGELCEWTPVLTPWLRE 246
ENGKREIALWFKEGELCEW VL WLRE
Sbjct: 202 ENGKREIALWFKEGELCEWDSVLAKWLRE 230
>dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum]
Length = 232
Score = 172 bits (437), Expect = 2e-42
Identities = 81/90 (90%), Positives = 84/90 (93%)
Frame = -3
Query: 515 KLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDS 336
KLIDYITSGPVVCMAWEGVGVVASARKLIGAT+PL AEPGTIRGDLAVQTGRN+VHGSDS
Sbjct: 143 KLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDS 202
Query: 335 PENGKREIALWFKEGELCEWTPVLTPWLRE 246
P+NGKREIALWF EGELC WTPV PWL E
Sbjct: 203 PDNGKREIALWFGEGELCSWTPVQEPWLIE 232
>ref|NP_568970.1| nucleotide diphosphate kinase Ia (emb|CAB58230.1); protein id:
At5g63310.1, supported by cDNA: gi_3063660 [Arabidopsis
thaliana] gi|11260887|pir||T51612 nucleoside-diphosphate
kinase (EC 2.7.4.6) Ia [validated] - Arabidopsis
thaliana gi|3063661|gb|AAC14280.1| nucleoside
diphosphate kinase Ia [Arabidopsis thaliana]
Length = 152
Score = 170 bits (430), Expect = 1e-41
Identities = 80/89 (89%), Positives = 82/89 (91%)
Frame = -3
Query: 512 LIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 333
LI+YITSGPVVCMAWEGVGVVASARKLIG TDPLQAEPGTIRGDLAVQTGRNIVHGSDSP
Sbjct: 64 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 123
Query: 332 ENGKREIALWFKEGELCEWTPVLTPWLRE 246
ENGKREI LWFKEGELC+W L WLRE
Sbjct: 124 ENGKREIGLWFKEGELCKWDSALATWLRE 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,024,801
Number of Sequences: 1393205
Number of extensions: 8506160
Number of successful extensions: 20669
Number of sequences better than 10.0: 316
Number of HSP's better than 10.0 without gapping: 19969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20624
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
