Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002904A_C01 KMC002904A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH45352.1| Similar to origin recognition complex, subunit 3-... 33 1.4
emb|CAC37107.1| possible DNA polymerase I, thermostable [Leishma... 31 7.1
>gb|AAH45352.1| Similar to origin recognition complex, subunit 3-like (yeast)
[Danio rerio]
Length = 706
Score = 33.5 bits (75), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 294 KVLTGSEQLLNICKHH*NVECWNQTFTTSLFQFSSNYFPLIECLH 428
++LT + + +C QT SL ++ NYFP+++CLH
Sbjct: 378 RLLTNDQHVKEVC----------QTLLKSLHKYHKNYFPILQCLH 412
>emb|CAC37107.1| possible DNA polymerase I, thermostable [Leishmania major]
Length = 1429
Score = 31.2 bits (69), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 305 WLRTVVKYLQAPLKCRMLESDLHHISIPIFVQLFPSDRMPTP 430
W T+ +YL +C + LH +++ VQL PS R+ TP
Sbjct: 534 WCVTLAEYLLEAQRCTTGSNSLHDLALRHGVQLPPSSRVGTP 575
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,764,088
Number of Sequences: 1393205
Number of extensions: 7879823
Number of successful extensions: 14060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14060
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
