Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002903A_C01 KMC002903A_c01
(245 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_663211.1| hypothetical protein [Phthorimaea operculella g... 32 2.4
ref|NP_078853.1| KIAA1985 protein [Homo sapiens] gi|10435659|dbj... 30 9.0
dbj|BAB85571.1| KIAA1985 protein [Homo sapiens] 30 9.0
>ref|NP_663211.1| hypothetical protein [Phthorimaea operculella granulovirus]
gi|21637027|gb|AAM70244.1| hypothetical protein
[Phthorimaea operculella granulovirus]
Length = 810
Score = 32.0 bits (71), Expect = 2.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 37 QLTEIKLN*LYNPNLINKISFSPN*LKIPQLTQILNLNTPNFKP 168
++ +I YNPN+ N+ SF+PN I Q + I N +F P
Sbjct: 433 EINQIDTTNQYNPNITNQSSFTPN---IAQSSNITNTTQSSFNP 473
>ref|NP_078853.1| KIAA1985 protein [Homo sapiens] gi|10435659|dbj|BAB14631.1| unnamed
protein product [Homo sapiens]
Length = 150
Score = 30.0 bits (66), Expect = 9.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 174 ISSICQASFRGSRPSGCTGSRAR 242
+ +ICQ+ SRPSGC+ RAR
Sbjct: 119 LDNICQSPLWHSRPSGCSSERAR 141
>dbj|BAB85571.1| KIAA1985 protein [Homo sapiens]
Length = 955
Score = 30.0 bits (66), Expect = 9.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 174 ISSICQASFRGSRPSGCTGSRAR 242
+ +ICQ+ SRPSGC+ RAR
Sbjct: 924 LDNICQSPLWHSRPSGCSSERAR 946
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,445,516
Number of Sequences: 1393205
Number of extensions: 3243210
Number of successful extensions: 4764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 448,689,247
effective HSP length: 57
effective length of database: 369,276,562
effective search space used: 8862637488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
