Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002902A_C01 KMC002902A_c01
(779 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180180.1| unknown protein; protein id: At2g26110.1 [Arabi... 116 3e-25
gb|AAK60285.1|AF385692_1 AT5g56980/MHM17_10 [Arabidopsis thalian... 87 3e-16
gb|AAM64707.1| unknown [Arabidopsis thaliana] 87 3e-16
ref|NP_568845.1| putative protein; protein id: At5g56980.1, supp... 87 3e-16
dbj|BAA97028.2| gene_id:MHM17.10~pir||T04268~similar to unknown ... 87 3e-16
>ref|NP_180180.1| unknown protein; protein id: At2g26110.1 [Arabidopsis thaliana]
gi|7487204|pir||T02613 hypothetical protein At2g26110
[imported] - Arabidopsis thaliana
gi|3413703|gb|AAC31226.1| unknown protein [Arabidopsis
thaliana]
Length = 309
Score = 116 bits (291), Expect = 3e-25
Identities = 59/113 (52%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Frame = -1
Query: 758 SMDEIYRKLQKQGQGGNFSRTSSDTKPASGEVPVNLSRKMKKSASSKSAFGHFKEEDI-L 582
S++E+Y KL + +RT SDT+PA+G P L +KMKKSAS+KS F HF+E++I +
Sbjct: 195 SLEEVYSKLNLN----HVARTKSDTEPAAGIRPPKLPKKMKKSASTKSPFSHFQEDEISV 250
Query: 581 ESRRPATAREAKPASAADDDDGVDAKADDFINKFKQQLQLQRLDSIIRYKDMI 423
E+RRPAT + + + + D+ VDAKADDFIN+FK QL+LQR+DSI +YK+M+
Sbjct: 251 EARRPATVKVPRVTTVEEADEEVDAKADDFINRFKHQLKLQRIDSITKYKEMV 303
>gb|AAK60285.1|AF385692_1 AT5g56980/MHM17_10 [Arabidopsis thaliana]
gi|18700202|gb|AAL77711.1| AT5g56980/MHM17_10
[Arabidopsis thaliana]
Length = 379
Score = 87.0 bits (214), Expect = 3e-16
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Frame = -1
Query: 644 KMKKSASSKSAFG----HFKEEDILES---RRPATAREAKPASAADDDDGVDAKADDFIN 486
KM KSAS KS FG H + + +ES RRP T R + S D +DGVDAKA DFIN
Sbjct: 296 KMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFIN 355
Query: 485 KFKQQLQLQRLDSIIRYKDMI 423
KFKQQL+LQRLDSI+RYK+M+
Sbjct: 356 KFKQQLKLQRLDSILRYKEML 376
>gb|AAM64707.1| unknown [Arabidopsis thaliana]
Length = 381
Score = 87.0 bits (214), Expect = 3e-16
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Frame = -1
Query: 644 KMKKSASSKSAFG----HFKEEDILES---RRPATAREAKPASAADDDDGVDAKADDFIN 486
KM KSAS KS FG H + + +ES RRP T R + S D +DGVDAKA DFIN
Sbjct: 298 KMTKSASEKSGFGFAGSHAEAPETVESVERRRPDTTRVERSTSFGDGEDGVDAKASDFIN 357
Query: 485 KFKQQLQLQRLDSIIRYKDMI 423
KFKQQL+LQRLDSI+RYK+M+
Sbjct: 358 KFKQQLKLQRLDSILRYKEML 378
>ref|NP_568845.1| putative protein; protein id: At5g56980.1, supported by cDNA:
32257., supported by cDNA: gi_14326478, supported by
cDNA: gi_18700201 [Arabidopsis thaliana]
Length = 379
Score = 87.0 bits (214), Expect = 3e-16
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Frame = -1
Query: 644 KMKKSASSKSAFG----HFKEEDILES---RRPATAREAKPASAADDDDGVDAKADDFIN 486
KM KSAS KS FG H + + +ES RRP T R + S D +DGVDAKA DFIN
Sbjct: 296 KMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFIN 355
Query: 485 KFKQQLQLQRLDSIIRYKDMI 423
KFKQQL+LQRLDSI+RYK+M+
Sbjct: 356 KFKQQLKLQRLDSILRYKEML 376
>dbj|BAA97028.2| gene_id:MHM17.10~pir||T04268~similar to unknown protein
[Arabidopsis thaliana]
Length = 318
Score = 87.0 bits (214), Expect = 3e-16
Identities = 48/81 (59%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Frame = -1
Query: 644 KMKKSASSKSAFG----HFKEEDILES---RRPATAREAKPASAADDDDGVDAKADDFIN 486
KM KSAS KS FG H + + +ES RRP T R + S D +DGVDAKA DFIN
Sbjct: 235 KMTKSASEKSGFGFAGSHAEAPETVESLERRRPDTTRVERSTSFGDGEDGVDAKASDFIN 294
Query: 485 KFKQQLQLQRLDSIIRYKDMI 423
KFKQQL+LQRLDSI+RYK+M+
Sbjct: 295 KFKQQLKLQRLDSILRYKEML 315
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,801,740
Number of Sequences: 1393205
Number of extensions: 16324979
Number of successful extensions: 108908
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 75427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100742
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
