Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002900A_C01 KMC002900A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196080.1| RRM-containing protein; protein id: At5g04600.1... 99 3e-20
gb|AAL76994.1| RNA binding protein [Elaeis oleifera] 85 6e-16
ref|NP_775395.1| mki67 (FHA domain) interacting nucleolar phosph... 35 0.52
ref|NP_649710.1| CG1234-PA [Drosophila melanogaster] gi|7298835|... 35 0.68
dbj|BAB41210.1| nucleolar phosphoprotein Nopp34 [Homo sapiens] g... 35 0.68
>ref|NP_196080.1| RRM-containing protein; protein id: At5g04600.1, supported by cDNA:
3774., supported by cDNA: gi_14190442, supported by
cDNA: gi_15810056, supported by cDNA: gi_17380695
[Arabidopsis thaliana] gi|11358792|pir||T48456 rna
binding protein-like - Arabidopsis thaliana
gi|7406464|emb|CAB85566.1| rna binding protein-like
[Arabidopsis thaliana]
gi|14190443|gb|AAK55702.1|AF378899_1
AT5g04600/T32M21_200 [Arabidopsis thaliana]
gi|15810057|gb|AAL06954.1| AT5g04600/T32M21_200
[Arabidopsis thaliana] gi|17380696|gb|AAL36178.1|
putative rna binding protein [Arabidopsis thaliana]
gi|21689805|gb|AAM67546.1| putative RNA binding protein
[Arabidopsis thaliana]
Length = 222
Score = 99.4 bits (246), Expect = 3e-20
Identities = 43/64 (67%), Positives = 57/64 (88%)
Frame = -1
Query: 577 DSVEIQREQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQPAPKKL 398
DSV+I+R Q +KERTLEEHRK+++KIV +D+KRRK+IE AGI+YECPE+VGN QP PK++
Sbjct: 157 DSVQIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRI 216
Query: 397 KFED 386
KF +
Sbjct: 217 KFSE 220
>gb|AAL76994.1| RNA binding protein [Elaeis oleifera]
Length = 218
Score = 85.1 bits (209), Expect = 6e-16
Identities = 36/60 (60%), Positives = 52/60 (86%)
Frame = -1
Query: 565 IQREQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQPAPKKLKFED 386
I R+QH+KERTLEEH+++V+ I+ R++KR K+I+ AGIDYECP+ VG+IQ PKK+KF++
Sbjct: 156 IARKQHNKERTLEEHQRMVKGILKRNEKRHKRIKAAGIDYECPDFVGDIQAGPKKIKFDE 215
>ref|NP_775395.1| mki67 (FHA domain) interacting nucleolar phosphoprotein (human) -
like [Danio rerio] gi|21105400|gb|AAM34644.1|AF506200_1
Nopp34 nucleolar phosphoprotein-like protein [Danio
rerio]
Length = 269
Score = 35.4 bits (80), Expect = 0.52
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -1
Query: 553 QHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQPAPK 404
+++K T ++ +K+ K++S++ K RK++ GIDY+ P I PA K
Sbjct: 148 RYNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDFPGFAAQI-PAKK 196
>ref|NP_649710.1| CG1234-PA [Drosophila melanogaster] gi|7298835|gb|AAF54043.1|
CG1234-PA [Drosophila melanogaster]
gi|15292019|gb|AAK93278.1| LD35257p [Drosophila
melanogaster]
Length = 822
Score = 35.0 bits (79), Expect = 0.68
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = -1
Query: 574 SVEIQREQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIVGNIQPAPKKL 398
+++ ++E K++ LE HR+ + + +++KRRKK+ E + E N Q +KL
Sbjct: 450 NLDAEKENELKQKKLESHRQRLLSLSKKERKRRKKLTEVNRELEETRAEENKQAKHQKL 508
>dbj|BAB41210.1| nucleolar phosphoprotein Nopp34 [Homo sapiens]
gi|18605744|gb|AAH22990.1| nucleolar protein interacting
with the FHA domain of pKi-67 [Homo sapiens]
Length = 293
Score = 35.0 bits (79), Expect = 0.68
Identities = 12/43 (27%), Positives = 29/43 (66%)
Frame = -1
Query: 556 EQHDKERTLEEHRKLVEKIVSRDKKRRKKIEEAGIDYECPEIV 428
+++++ RTL + ++ E+ +++ RKK+ + GIDY+ P ++
Sbjct: 147 KRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLI 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,211,409
Number of Sequences: 1393205
Number of extensions: 8612656
Number of successful extensions: 26821
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26714
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
