Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002899A_C01 KMC002899A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564931.1| expressed protein; protein id: At1g68490.1, sup... 80 2e-14
ref|NP_568326.1| putative protein; protein id: At5g16110.1, supp... 69 4e-11
pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thalian... 69 4e-11
ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, sup... 54 1e-06
ref|NP_172796.1| unknown protein; protein id: At1g13390.1 [Arabi... 47 3e-04
>ref|NP_564931.1| expressed protein; protein id: At1g68490.1, supported by cDNA:
37060. [Arabidopsis thaliana] gi|25404742|pir||A96709
unknown protein, 35272-36292 [imported] - Arabidopsis
thaliana gi|12324888|gb|AAG52398.1|AC011915_12 unknown
protein; 35272-36292 [Arabidopsis thaliana]
gi|21593205|gb|AAM65154.1| unknown [Arabidopsis
thaliana] gi|29028824|gb|AAO64791.1| At1g68490
[Arabidopsis thaliana]
Length = 183
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/50 (78%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Frame = -1
Query: 640 VPAPSSPSSSSRKGGGCV-RSNFGNNPAVRVEGFDCLDRDRRNCSIPALA 494
+P SSPSSSS + GGCV R NFGN+P VRVEGFDCLDRD RNCSIPALA
Sbjct: 134 LPPSSSPSSSSGRKGGCVVRGNFGNSPKVRVEGFDCLDRDSRNCSIPALA 183
>ref|NP_568326.1| putative protein; protein id: At5g16110.1, supported by cDNA:
gi_13358202, supported by cDNA: gi_15809951 [Arabidopsis
thaliana] gi|11762168|gb|AAG40362.1|AF325010_1 AT5g16110
[Arabidopsis thaliana] gi|15809952|gb|AAL06903.1|
AT5g16110/T21H19_30 [Arabidopsis thaliana]
Length = 178
Score = 69.3 bits (168), Expect = 4e-11
Identities = 38/58 (65%), Positives = 43/58 (73%), Gaps = 1/58 (1%)
Frame = -1
Query: 664 LSPSSWVVVPAPSSPSSSSRKGGGCVRSNFG-NNPAVRVEGFDCLDRDRRNCSIPALA 494
L P S P+PSS SSSS GCVR FG N+PAVRVEGFDCL+RDR+N SIPA+A
Sbjct: 122 LQPYSATGFPSPSSSSSSS-SSRGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 178
>pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thaliana
gi|9755821|emb|CAC01852.1| putative protein [Arabidopsis
thaliana]
Length = 244
Score = 69.3 bits (168), Expect = 4e-11
Identities = 38/58 (65%), Positives = 43/58 (73%), Gaps = 1/58 (1%)
Frame = -1
Query: 664 LSPSSWVVVPAPSSPSSSSRKGGGCVRSNFG-NNPAVRVEGFDCLDRDRRNCSIPALA 494
L P S P+PSS SSSS GCVR FG N+PAVRVEGFDCL+RDR+N SIPA+A
Sbjct: 188 LQPYSATGFPSPSSSSSSS-SSRGCVRMKFGLNSPAVRVEGFDCLNRDRQNSSIPAMA 244
>ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, supported by cDNA:
1232. [Arabidopsis thaliana] gi|21537194|gb|AAM61535.1|
unknown [Arabidopsis thaliana]
Length = 162
Score = 54.3 bits (129), Expect = 1e-06
Identities = 32/58 (55%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = -1
Query: 664 LSPSSWVVVPAPSSPSSSSRKGGGCVRSNFGNNPA-VRVEGFDCLDRDRRNCSIPALA 494
+SPS ++P S+SR GC R FG PA VRVEGFDCL+RDR N SIPA+A
Sbjct: 111 VSPSLSPLLP------SASRVKSGCGRMKFGVKPATVRVEGFDCLNRDRPNSSIPAMA 162
>ref|NP_172796.1| unknown protein; protein id: At1g13390.1 [Arabidopsis thaliana]
gi|9958074|gb|AAG09563.1|AC011810_22 Unknown protein
[Arabidopsis thaliana]
Length = 176
Score = 46.6 bits (109), Expect = 3e-04
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Frame = -1
Query: 646 VVVPAPSSPSS------SSRKGGGCVRS--NFGNNPAVRVEGFDCLDRDRRNCSIPALA 494
V P+PS+P + SS + G CV + +FGNNP VRV GFDC DR N SI LA
Sbjct: 119 VASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNPVVRVVGFDC-DRRSSNRSISTLA 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,191,537
Number of Sequences: 1393205
Number of extensions: 13802292
Number of successful extensions: 41978
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41920
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
