Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002896A_C02 KMC002896A_c02
(1021 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567244.1| predicted NADH dehydrogenase 24 kD subunit; pro... 449 e-125
sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase 24 kDa subun... 434 e-120
ref|NP_776990.1| NADH dehydrogenase flavoprotein 2 (24kD) [ubiqu... 232 6e-60
ref|NP_066552.1| NADH dehydrogenase (ubiquinone) flavoprotein 2,... 227 3e-58
sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase 24 kDa subun... 226 3e-58
>ref|NP_567244.1| predicted NADH dehydrogenase 24 kD subunit; protein id: At4g02580.1,
supported by cDNA: gi_15450450 [Arabidopsis thaliana]
gi|15450451|gb|AAK96519.1| AT4g02580/T10P11_14
[Arabidopsis thaliana] gi|24797038|gb|AAN64531.1|
At4g02580/T10P11_14 [Arabidopsis thaliana]
Length = 255
Score = 449 bits (1155), Expect = e-125
Identities = 216/255 (84%), Positives = 234/255 (91%), Gaps = 3/255 (1%)
Frame = -2
Query: 1011 MLARLAANRLTEIRQIFRQPTR---RAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEI 841
MLARLAA RL EIRQ+FRQPT R+ STALNYHLDSP N P++PWEF++ N+ K KEI
Sbjct: 1 MLARLAAKRLLEIRQVFRQPTSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEI 60
Query: 840 ISNYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRA 661
+S YPSNYKQSAVIPLLDLAQQQ+GGWLPVSAMN VA++IEVAPIRVYEVATFYSMFNRA
Sbjct: 61 LSYYPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRA 120
Query: 660 KVGKYHLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGCCVNAPM 481
KVGKYHLLVCGTTPCMIRGSR+IE ALL+HLGVKR EVTKDGLFSVGEMECMGCCVNAPM
Sbjct: 121 KVGKYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPM 180
Query: 480 ITVADYSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPEGGNTTL 301
ITVADYSNGSEGYTYNY+EDVTP++VVE+VE LRKGEKPP GTQNP+RIKCGPEGGN TL
Sbjct: 181 ITVADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTL 240
Query: 300 LGEPKPPPCRDLDAC 256
LGEPKPP RDLDAC
Sbjct: 241 LGEPKPPQFRDLDAC 255
>sp|O22769|NUHM_ARATH NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor gi|7427765|pir||T01091 NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) 24K chain homolog - Arabidopsis
thaliana gi|3892051|gb|AAC78260.1|AAC78260 predicted NADH
dehydrogenase 24 kD subunit [Arabidopsis thaliana]
gi|7269018|emb|CAB80751.1| predicted NADH dehydrogenase
24 kD subunit [Arabidopsis thaliana]
Length = 244
Score = 434 bits (1115), Expect = e-120
Identities = 209/252 (82%), Positives = 227/252 (89%)
Frame = -2
Query: 1011 MLARLAANRLTEIRQIFRQPTRRAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEIISN 832
MLARLAA RL EIRQ+FRQPT + HLDSP N P++PWEF++ N+ K KEI+S
Sbjct: 1 MLARLAAKRLLEIRQVFRQPTSQ--------HLDSPDNKPDLPWEFSEANQSKVKEILSY 52
Query: 831 YPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRAKVG 652
YPSNYKQSAVIPLLDLAQQQ+GGWLPVSAMN VA++IEVAPIRVYEVATFYSMFNRAKVG
Sbjct: 53 YPSNYKQSAVIPLLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVG 112
Query: 651 KYHLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 472
KYHLLVCGTTPCMIRGSR+IE ALL+HLGVKR EVTKDGLFSVGEMECMGCCVNAPMITV
Sbjct: 113 KYHLLVCGTTPCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEMECMGCCVNAPMITV 172
Query: 471 ADYSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPEGGNTTLLGE 292
ADYSNGSEGYTYNY+EDVTP++VVE+VE LRKGEKPP GTQNP+RIKCGPEGGN TLLGE
Sbjct: 173 ADYSNGSEGYTYNYFEDVTPEKVVEIVEKLRKGEKPPHGTQNPKRIKCGPEGGNKTLLGE 232
Query: 291 PKPPPCRDLDAC 256
PKPP RDLDAC
Sbjct: 233 PKPPQFRDLDAC 244
>ref|NP_776990.1| NADH dehydrogenase flavoprotein 2 (24kD) [ubiquinone]
[NADH-ubiquinone reductase 24 kDa mitochondrial] [Bos
taurus] gi|128865|sp|P04394|NUHM_BOVIN NADH-ubiquinone
oxidoreductase 24 kDa subunit, mitochondrial precursor
(Polypeptide II) gi|89673|pir||B30113 NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) 24K chain precursor - bovine
gi|163399|gb|AAA87358.1| NADH-ubiquinone reductase 24 kDa
subunit [Bos taurus]
Length = 249
Score = 232 bits (592), Expect = 6e-60
Identities = 117/242 (48%), Positives = 161/242 (66%)
Frame = -2
Query: 1005 ARLAANRLTEIRQIFRQPTRRAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEIISNYP 826
A LAA+ IR + + + AL H D+P NNP P++FT N ++ + I+ NYP
Sbjct: 12 AGLAAHWGKHIRNLHKTAVQNGAGGALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYP 71
Query: 825 SNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRAKVGKY 646
+K +AV+P+LDLAQ+Q+G WLP+SAMN+VA I++V P+RVYEVATFY+M+NR VGKY
Sbjct: 72 EGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKY 130
Query: 645 HLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 466
H+ VC TTPCM+R S I EA+ LG+K E T D LF++ E+EC+G CVNAPM+ + D
Sbjct: 131 HIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND 190
Query: 465 YSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPEGGNTTLLGEPK 286
NYYED+TPK + E+++ L+ G+ P PG ++ R C P GG T+L PK
Sbjct: 191 ----------NYYEDLTPKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPK 239
Query: 285 PP 280
P
Sbjct: 240 GP 241
>ref|NP_066552.1| NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa; NADH
dehydrogenase (ubiquinone) flavoprotein 2 (24kD) [Homo
sapiens] gi|88230|pir||A30113 NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) 24K chain precursor - human
gi|188852|gb|AAA75390.1| NADH-ubiquinone reductase
Length = 249
Score = 227 bits (578), Expect = 3e-58
Identities = 113/242 (46%), Positives = 160/242 (65%)
Frame = -2
Query: 1005 ARLAANRLTEIRQIFRQPTRRAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEIISNYP 826
A L A+ +R + + + AL H D+P NNP+ P++FT N ++ + I+ NYP
Sbjct: 12 AGLTAHWGRHVRNLHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYP 71
Query: 825 SNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRAKVGKY 646
+K +AV+P+LDLAQ+Q+G WLP+SAMN+VA +++V P+RVYEVATFY+M+NR VGKY
Sbjct: 72 EGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKY 130
Query: 645 HLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 466
H+ VC TTPCM+R S I EA+ LG+K E T D LF++ E+EC+G CVNAPM+ + D
Sbjct: 131 HIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND 190
Query: 465 YSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPEGGNTTLLGEPK 286
NYYED+T K + E+++ L+ G+ P PG ++ R C P GG T+L PK
Sbjct: 191 ----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPK 239
Query: 285 PP 280
P
Sbjct: 240 GP 241
>sp|P19404|NUHM_HUMAN NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial
precursor gi|12804451|gb|AAH01632.1|AAH01632 Similar to
NADH dehydrogenase (ubiquinone) flavoprotein 2 (24kD)
[Homo sapiens] gi|17028359|gb|AAH17487.1|AAH17487 NADH
dehydrogenase (ubiquinone) flavoprotein 2 (24kD) [Homo
sapiens]
Length = 249
Score = 226 bits (577), Expect = 3e-58
Identities = 113/242 (46%), Positives = 160/242 (65%)
Frame = -2
Query: 1005 ARLAANRLTEIRQIFRQPTRRAFSTALNYHLDSPVNNPNVPWEFTDVNKQKAKEIISNYP 826
A L A+ +R + + + AL H D+P NNP+ P++FT N ++ + I+ NYP
Sbjct: 12 AGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYP 71
Query: 825 SNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVARIIEVAPIRVYEVATFYSMFNRAKVGKY 646
+K +AV+P+LDLAQ+Q+G WLP+SAMN+VA +++V P+RVYEVATFY+M+NR VGKY
Sbjct: 72 EGHKAAAVLPVLDLAQRQNG-WLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKY 130
Query: 645 HLLVCGTTPCMIRGSREIEEALLNHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 466
H+ VC TTPCM+R S I EA+ LG+K E T D LF++ E+EC+G CVNAPM+ + D
Sbjct: 131 HIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQIND 190
Query: 465 YSNGSEGYTYNYYEDVTPKRVVELVEMLRKGEKPPPGTQNPQRIKCGPEGGNTTLLGEPK 286
NYYED+T K + E+++ L+ G+ P PG ++ R C P GG T+L PK
Sbjct: 191 ----------NYYEDLTAKDIEEIIDELKAGKIPKPGPRS-GRFSCEPAGGLTSLTEPPK 239
Query: 285 PP 280
P
Sbjct: 240 GP 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932,507,037
Number of Sequences: 1393205
Number of extensions: 22477266
Number of successful extensions: 61064
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 56908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60912
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59325342805
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
