Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002894A_C01 KMC002894A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|2213652... 169 2e-41
ref|NP_197391.1| putative protein; protein id: At5g18900.1, supp... 169 2e-41
ref|NP_566279.1| expressed protein; protein id: At3g06300.1, sup... 158 3e-38
gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [... 158 3e-38
gb|AAF08583.1|AC011623_16 unknown protein [Arabidopsis thaliana] 158 3e-38
>gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|22136524|gb|AAM91340.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 169 bits (427), Expect = 2e-41
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = -1
Query: 531 PRRGDALLFFSLHTTATPDPDSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDQH 352
PR+GDALLFF+LH A PDP SLH GCPVIEGEKWSATKWIHVDSFD+ V G+C+D +
Sbjct: 203 PRKGDALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSFDRIVTPSGNCTDMN 262
Query: 351 ESCQRWASLGECTNNPEYMVGSSDLPGSCRRSCKAC 244
ESC+RWA LGECT NPEYMVG+++LPG CRRSCKAC
Sbjct: 263 ESCERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298
>ref|NP_197391.1| putative protein; protein id: At5g18900.1, supported by cDNA:
37828., supported by cDNA: gi_20260279 [Arabidopsis
thaliana] gi|21593296|gb|AAM65245.1| prolyl
4-hydroxylase alpha subunit-like protein [Arabidopsis
thaliana]
Length = 298
Score = 169 bits (427), Expect = 2e-41
Identities = 73/96 (76%), Positives = 83/96 (86%)
Frame = -1
Query: 531 PRRGDALLFFSLHTTATPDPDSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDQH 352
PR+GDALLFF+LH A PDP SLH GCPVIEGEKWSATKWIHVDSFD+ V G+C+D +
Sbjct: 203 PRKGDALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSFDRIVTPSGNCTDMN 262
Query: 351 ESCQRWASLGECTNNPEYMVGSSDLPGSCRRSCKAC 244
ESC+RWA LGECT NPEYMVG+++LPG CRRSCKAC
Sbjct: 263 ESCERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298
>ref|NP_566279.1| expressed protein; protein id: At3g06300.1, supported by cDNA:
95931. [Arabidopsis thaliana]
Length = 299
Score = 158 bits (400), Expect = 3e-38
Identities = 68/96 (70%), Positives = 81/96 (83%)
Frame = -1
Query: 531 PRRGDALLFFSLHTTATPDPDSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDQH 352
P++G+ALLFF+L A PDP SLH GCPVIEGEKWSATKWIHVDSFDK + G+C+D +
Sbjct: 204 PKKGNALLFFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSFDKILTHDGNCTDVN 263
Query: 351 ESCQRWASLGECTNNPEYMVGSSDLPGSCRRSCKAC 244
ESC+RWA LGEC NPEYMVG+ ++PG+CRRSCKAC
Sbjct: 264 ESCERWAVLGECGKNPEYMVGTPEIPGNCRRSCKAC 299
>gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
thaliana]
Length = 297
Score = 158 bits (400), Expect = 3e-38
Identities = 68/96 (70%), Positives = 81/96 (83%)
Frame = -1
Query: 531 PRRGDALLFFSLHTTATPDPDSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDQH 352
P++G+ALLFF+L A PDP SLH GCPVIEGEKWSATKWIHVDSFDK + G+C+D +
Sbjct: 202 PKKGNALLFFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSFDKILTHDGNCTDVN 261
Query: 351 ESCQRWASLGECTNNPEYMVGSSDLPGSCRRSCKAC 244
ESC+RWA LGEC NPEYMVG+ ++PG+CRRSCKAC
Sbjct: 262 ESCERWAVLGECGKNPEYMVGTPEIPGNCRRSCKAC 297
>gb|AAF08583.1|AC011623_16 unknown protein [Arabidopsis thaliana]
Length = 278
Score = 158 bits (400), Expect = 3e-38
Identities = 68/96 (70%), Positives = 81/96 (83%)
Frame = -1
Query: 531 PRRGDALLFFSLHTTATPDPDSLHAGCPVIEGEKWSATKWIHVDSFDKTVGAGGDCSDQH 352
P++G+ALLFF+L A PDP SLH GCPVIEGEKWSATKWIHVDSFDK + G+C+D +
Sbjct: 183 PKKGNALLFFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSFDKILTHDGNCTDVN 242
Query: 351 ESCQRWASLGECTNNPEYMVGSSDLPGSCRRSCKAC 244
ESC+RWA LGEC NPEYMVG+ ++PG+CRRSCKAC
Sbjct: 243 ESCERWAVLGECGKNPEYMVGTPEIPGNCRRSCKAC 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,761,603
Number of Sequences: 1393205
Number of extensions: 10339100
Number of successful extensions: 28515
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 27115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28495
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
