Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002885A_C01 KMC002885A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192813.1| putative aldolase; protein id: At4g10750.1, sup... 81 9e-15
gb|AAB81520.1| putative aldolase [Arabidopsis thaliana] 80 2e-14
gb|AAM64963.1| putative aldolase [Arabidopsis thaliana] 78 6e-14
ref|NP_194138.1| putative protein; protein id: At4g24070.1 [Arab... 49 4e-05
gb|AAB63616.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase i... 44 0.001
>ref|NP_192813.1| putative aldolase; protein id: At4g10750.1, supported by cDNA:
35159. [Arabidopsis thaliana] gi|7486898|pir||T01902
hypothetical protein T12H20.10 - Arabidopsis thaliana
gi|3600031|gb|AAC35519.1| similar to
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolases
[Arabidopsis thaliana] gi|7267773|emb|CAB81176.1|
putative aldolase [Arabidopsis thaliana]
gi|26451478|dbj|BAC42838.1| putative aldolase
[Arabidopsis thaliana]
Length = 358
Score = 80.9 bits (198), Expect = 9e-15
Identities = 39/67 (58%), Positives = 47/67 (69%), Gaps = 6/67 (8%)
Frame = -2
Query: 547 FALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKASLVEDEEGEGKE------G 386
FA+P+DG ++R RGYHMV+GAVDVGLFR+AAVEDV FK LV + + E
Sbjct: 292 FAMPHDGAGEIRGRGYHMVAGAVDVGLFRNAAVEDVRRFKMGLVNESDSEDSSEHDKDVD 351
Query: 385 DEKYWSE 365
DEKYWSE
Sbjct: 352 DEKYWSE 358
>gb|AAB81520.1| putative aldolase [Arabidopsis thaliana]
Length = 248
Score = 79.7 bits (195), Expect = 2e-14
Identities = 38/67 (56%), Positives = 47/67 (69%), Gaps = 6/67 (8%)
Frame = -2
Query: 547 FALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKASLVEDEEGEGKE------G 386
FA+P+DG ++R RGYHMV+GAVDVGLFR+AAVEDV FK LV + + E
Sbjct: 175 FAMPHDGAGEIRGRGYHMVAGAVDVGLFRNAAVEDVRRFKMGLVNESDSEDSSEHDKDVD 234
Query: 385 DEKYWSE 365
DEKYWS+
Sbjct: 235 DEKYWSD 241
>gb|AAM64963.1| putative aldolase [Arabidopsis thaliana]
Length = 358
Score = 78.2 bits (191), Expect = 6e-14
Identities = 38/67 (56%), Positives = 46/67 (67%), Gaps = 6/67 (8%)
Frame = -2
Query: 547 FALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKASLVEDEEGEGKE------G 386
FA+P+DG ++R GYHMV+GAVDVGLFR+AAVEDV FK LV + + E
Sbjct: 292 FAMPHDGAGEIRGPGYHMVAGAVDVGLFRNAAVEDVRRFKMGLVNESDSEDSSEHDKDVD 351
Query: 385 DEKYWSE 365
DEKYWSE
Sbjct: 352 DEKYWSE 358
>ref|NP_194138.1| putative protein; protein id: At4g24070.1 [Arabidopsis thaliana]
gi|7487176|pir||T13453 hypothetical protein T19F6.60 -
Arabidopsis thaliana gi|2262109|gb|AAB63617.1|
hypothetical protein [Arabidopsis thaliana]
gi|5668635|emb|CAB51650.1| putative protein [Arabidopsis
thaliana] gi|7269256|emb|CAB81325.1| putative protein
[Arabidopsis thaliana]
Length = 66
Score = 48.9 bits (115), Expect = 4e-05
Identities = 23/39 (58%), Positives = 28/39 (70%)
Frame = -2
Query: 544 ALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFK 428
A D DL+SRGYHM+ GA DV LF+ A V+DV+SFK
Sbjct: 24 ATAQDKAVDLKSRGYHMILGATDVPLFKKAVVDDVKSFK 62
>gb|AAB63616.1| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase isolog [Arabidopsis
thaliana]
Length = 250
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/40 (47%), Positives = 28/40 (69%)
Frame = -2
Query: 544 ALPYDGPRDLRSRGYHMVSGAVDVGLFRSAAVEDVESFKA 425
A D DL++RGYH+V G+ DV L++ A V++V +FKA
Sbjct: 211 ATAQDKTGDLKARGYHVVLGSTDVSLYKKAVVDEVNAFKA 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,382,658
Number of Sequences: 1393205
Number of extensions: 9262253
Number of successful extensions: 32705
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 30130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32504
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
