Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002884A_C02 KMC002884A_c02
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL84301.1|AC073556_18 putative auxin independent growth-rela... 35 0.47
gb|AAN65001.1| Putative growth regulator protein [Oryza sativa (... 34 1.1
gb|EAA15430.1| hypothetical protein [Plasmodium yoelii yoelii] 32 5.2
ref|NP_566707.1| hypothetical protein; protein id: At3g22430.1 [... 31 6.9
ref|NP_596746.1| putative gas1 family protein [Schizosaccharomyc... 31 8.9
>gb|AAL84301.1|AC073556_18 putative auxin independent growth-related protein [Oryza sativa
(japonica cultivar-group)]
Length = 466
Score = 35.0 bits (79), Expect = 0.47
Identities = 19/42 (45%), Positives = 24/42 (56%)
Frame = +3
Query: 168 N*VLGPAFNQRTRNLIKQ*RRQEPKEEDYLNANPHEVLAMAR 293
N V+ P+ Q+ N +PKEEDY ANPHE LA +R
Sbjct: 421 NRVVQPSCRQKLEN--------KPKEEDYFYANPHECLANSR 454
>gb|AAN65001.1| Putative growth regulator protein [Oryza sativa (japonica
cultivar-group)]
Length = 498
Score = 33.9 bits (76), Expect = 1.1
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 234 EPKEEDYLNANPHEVLAMAR 293
+PKEEDY ANPHE L AR
Sbjct: 468 QPKEEDYFYANPHECLGAAR 487
>gb|EAA15430.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 463
Score = 31.6 bits (70), Expect = 5.2
Identities = 20/72 (27%), Positives = 37/72 (50%)
Frame = -2
Query: 404 SKIIMTPSPLIKFTYLIIFLSPYRHVFSRDHVVPDYSSCHCQHLMRIGIQIVFFFRFLPT 225
+K I + +I + + +I ++ Y ++ D+V D C + I I+I+FFF +L
Sbjct: 73 NKWINNKNIIISYIFKLIKINIYDKLY--DNVYSDNIYITCDRIF-INIKIIFFFSYLSY 129
Query: 224 LLFDQITCSLIE 189
LFD ++ E
Sbjct: 130 YLFDSLSLEKCE 141
>ref|NP_566707.1| hypothetical protein; protein id: At3g22430.1 [Arabidopsis
thaliana] gi|9293879|dbj|BAB01782.1|
gene_id:MCB17.18~unknown protein [Arabidopsis thaliana]
Length = 342
Score = 31.2 bits (69), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +3
Query: 228 RQEPKEEDYLNANPHEVLAMAR*VIGNHMISAKHMPIGGQKYD 356
RQ + Y N N H +A +G + +AKHM +G ++D
Sbjct: 200 RQRQQFMQYANPNDHSFMAGTSRDVGEDVRAAKHMRVGSSRHD 242
>ref|NP_596746.1| putative gas1 family protein [Schizosaccharomyces pombe]
gi|7492587|pir||T40276 probable gas1 family protein -
fission yeast (Schizosaccharomyces pombe)
gi|5441790|emb|CAB46773.1| putative gas1 family protein
[Schizosaccharomyces pombe]
Length = 456
Score = 30.8 bits (68), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -2
Query: 362 YLIIFLSPYRHVFSRDHVVPDYSSCHCQHL 273
Y+I+ L+ YRH SR H Y+ + QHL
Sbjct: 107 YVILDLNTYRHSISRAHPALSYNKVYLQHL 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,611,041
Number of Sequences: 1393205
Number of extensions: 8261064
Number of successful extensions: 13398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13396
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
