Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002882A_C01 KMC002882A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN71559.1| RH30043p [Drosophila melanogaster] 32 4.8
ref|NP_112455.1| toll-like receptor 9 [Mus musculus] gi|11761323... 32 6.2
sp|Q9EQU3|TLR9_MOUSE Toll-like receptor 9 precursor gi|13549077|... 32 6.2
gb|AAK28488.1|AF314224_1 toll-like receptor 9 [Mus musculus] 32 6.2
gb|AAD30063.1| Itgae protein [Mus sp.] 31 8.1
>gb|AAN71559.1| RH30043p [Drosophila melanogaster]
Length = 102
Score = 32.0 bits (71), Expect = 4.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 260 IYEHYHMLLLFFCFLVSGFDIRIIPWIFQIS*DQGINVLPVPIG*SFHATTFGCYLPWLC 439
+++H H LLLF FLV+ F + + +LP + +G YLP+L
Sbjct: 9 LHQHNHCLLLFLLFLVASFSCIFV---------RHFALLPFVLAKQLLVMAYGYYLPFLV 59
Query: 440 AR 445
+R
Sbjct: 60 SR 61
>ref|NP_112455.1| toll-like receptor 9 [Mus musculus] gi|11761323|dbj|BAB19260.1|
toll-like receptor 9 [Mus musculus]
Length = 1032
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/42 (33%), Positives = 24/42 (56%)
Frame = -3
Query: 153 CKEQYLDWSCYVLVLVSASSKGSQLVVTHSVCLFDISLSFHL 28
C ++ L W C+ L L+ A + G + + H +C +D+ FHL
Sbjct: 810 CLDEVLSWDCFGLSLL-AVAVGMVVPILHHLCGWDVWYCFHL 850
>sp|Q9EQU3|TLR9_MOUSE Toll-like receptor 9 precursor gi|13549077|gb|AAK29625.1|AF348140_1
toll-like receptor 9 [Mus musculus]
Length = 1032
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/42 (33%), Positives = 24/42 (56%)
Frame = -3
Query: 153 CKEQYLDWSCYVLVLVSASSKGSQLVVTHSVCLFDISLSFHL 28
C ++ L W C+ L L+ A + G + + H +C +D+ FHL
Sbjct: 810 CLDEVLSWDCFGLSLL-AVAVGMVVPILHHLCGWDVWYCFHL 850
>gb|AAK28488.1|AF314224_1 toll-like receptor 9 [Mus musculus]
Length = 1032
Score = 31.6 bits (70), Expect = 6.2
Identities = 14/42 (33%), Positives = 24/42 (56%)
Frame = -3
Query: 153 CKEQYLDWSCYVLVLVSASSKGSQLVVTHSVCLFDISLSFHL 28
C ++ L W C+ L L+ A + G + + H +C +D+ FHL
Sbjct: 810 CLDEVLSWDCFGLSLL-AVAVGMVVPILHHLCGWDVWYCFHL 850
>gb|AAD30063.1| Itgae protein [Mus sp.]
Length = 895
Score = 31.2 bits (69), Expect = 8.1
Identities = 20/56 (35%), Positives = 27/56 (47%), Gaps = 10/56 (17%)
Frame = +1
Query: 304 GLRV*YQNHSMDLS-DQLRPRNQCPPSS---------NRLKFPCHHFWLLSPMAVC 441
GLR + N ++D+ + R R QC SS N F C HFWL+S +C
Sbjct: 698 GLREMFLNFTVDVDVTKQRQRLQCEDSSGCQSCLRKWNGGSFLCEHFWLISTEELC 753
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,239,967
Number of Sequences: 1393205
Number of extensions: 9180196
Number of successful extensions: 19826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19823
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
