Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002880A_C01 KMC002880A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC80988.1| protein kinase 2 [Beta vulgaris] 106 2e-39
gb|AAK54616.1|AF374474_1 CK2 alpha subunit [Nicotiana tabacum] 101 3e-38
dbj|BAB21589.1| casein kinase II alpha subunit [Oryza sativa (in... 102 5e-37
gb|AAK63938.1|AC084282_19 casein kinase II alpha subunit, 5'-par... 102 5e-37
ref|NP_201539.1| casein kinase II alpha subunit; protein id: At5... 104 6e-37
>emb|CAC80988.1| protein kinase 2 [Beta vulgaris]
Length = 333
Score = 106 bits (265), Expect(2) = 2e-39
Identities = 49/61 (80%), Positives = 55/61 (89%)
Frame = -2
Query: 578 DQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAHR 399
DQLVKIAKVLGTDELNAYLNKYHL +DP+LDAL+G HSRKPW++F+N NQHLVSPEA
Sbjct: 235 DQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSRFVNPDNQHLVSPEAID 294
Query: 398 F 396
F
Sbjct: 295 F 295
Score = 77.8 bits (190), Expect(2) = 2e-39
Identities = 37/41 (90%), Positives = 39/41 (94%)
Frame = -3
Query: 403 IDFLDKLLRYDHQDRLTAREAMAHPYFSLVRAAENSSMRTQ 281
IDFLDKLLRYDHQDRLTA+EAMAHPYFS VRAAE+S MRTQ
Sbjct: 293 IDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRTQ 333
>gb|AAK54616.1|AF374474_1 CK2 alpha subunit [Nicotiana tabacum]
Length = 333
Score = 101 bits (252), Expect(2) = 3e-38
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = -2
Query: 578 DQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAHR 399
DQLVKIAKVLGTDELNAYL+KY L +DP+L+A++G HSRKPW+KFIN+ NQHLVSPEA
Sbjct: 235 DQLVKIAKVLGTDELNAYLHKYQLELDPQLEAMVGRHSRKPWSKFINADNQHLVSPEAID 294
Query: 398 F 396
F
Sbjct: 295 F 295
Score = 78.6 bits (192), Expect(2) = 3e-38
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = -3
Query: 403 IDFLDKLLRYDHQDRLTAREAMAHPYFSLVRAAENSSMRTQ 281
IDFLDKLLRYDHQDRLTAREAMAHPYF VRAAENS MRTQ
Sbjct: 293 IDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRMRTQ 333
>dbj|BAB21589.1| casein kinase II alpha subunit [Oryza sativa (indica
cultivar-group)] gi|12697581|dbj|BAB21591.1| casein
kinase II alpha subunit [Oryza sativa (indica
cultivar-group)]
Length = 333
Score = 102 bits (255), Expect(2) = 5e-37
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = -2
Query: 578 DQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAHR 399
DQLVKIAKVLGT+ LNAYLNKYH+ +DP+L+AL+G HSRKPW+KFIN+ NQHLVSPEA
Sbjct: 235 DQLVKIAKVLGTEALNAYLNKYHIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVD 294
Query: 398 F 396
F
Sbjct: 295 F 295
Score = 73.6 bits (179), Expect(2) = 5e-37
Identities = 35/41 (85%), Positives = 36/41 (87%)
Frame = -3
Query: 403 IDFLDKLLRYDHQDRLTAREAMAHPYFSLVRAAENSSMRTQ 281
+DFLDKLLRYDHQDRLTAREAMAHPYF VRAAENS R Q
Sbjct: 293 VDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ 333
>gb|AAK63938.1|AC084282_19 casein kinase II alpha subunit, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 150
Score = 102 bits (255), Expect(2) = 5e-37
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = -2
Query: 578 DQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAHR 399
DQLVKIAKVLGT+ LNAYLNKYH+ +DP+L+AL+G HSRKPW+KFIN+ NQHLVSPEA
Sbjct: 52 DQLVKIAKVLGTEALNAYLNKYHIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVD 111
Query: 398 F 396
F
Sbjct: 112 F 112
Score = 73.6 bits (179), Expect(2) = 5e-37
Identities = 35/41 (85%), Positives = 36/41 (87%)
Frame = -3
Query: 403 IDFLDKLLRYDHQDRLTAREAMAHPYFSLVRAAENSSMRTQ 281
+DFLDKLLRYDHQDRLTAREAMAHPYF VRAAENS R Q
Sbjct: 110 VDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ 150
>ref|NP_201539.1| casein kinase II alpha subunit; protein id: At5g67380.1, supported
by cDNA: gi_391602 [Arabidopsis thaliana]
gi|13638266|sp|Q08467|KC21_ARATH Casein kinase II, alpha
chain 1 (CK II) gi|9758437|dbj|BAB09023.1| casein kinase
II alpha subunit [Arabidopsis thaliana]
Length = 333
Score = 104 bits (259), Expect(2) = 6e-37
Identities = 49/61 (80%), Positives = 55/61 (89%)
Frame = -2
Query: 578 DQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAHR 399
DQLVKIAKVLGTDELNAYLNKY L +DP+L+AL+G HSRKPW+KFIN+ NQHLVSPEA
Sbjct: 235 DQLVKIAKVLGTDELNAYLNKYQLELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAID 294
Query: 398 F 396
F
Sbjct: 295 F 295
Score = 71.6 bits (174), Expect(2) = 6e-37
Identities = 34/41 (82%), Positives = 37/41 (89%)
Frame = -3
Query: 403 IDFLDKLLRYDHQDRLTAREAMAHPYFSLVRAAENSSMRTQ 281
IDFLDKLLRYDHQDRLTA+EAMAH YF+ VRAAE S MR+Q
Sbjct: 293 IDFLDKLLRYDHQDRLTAKEAMAHAYFAQVRAAETSRMRSQ 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,516,361
Number of Sequences: 1393205
Number of extensions: 9475698
Number of successful extensions: 22400
Number of sequences better than 10.0: 667
Number of HSP's better than 10.0 without gapping: 21733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22370
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
