KMC002879A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC002879A_C01 KMC002879A_c01
ttttttttcagatgaTCAGACACAATTAGTGCAACAGTTTTCGTGTTAATTTCATTCATA
TAAGAATGAGCTTCAAATCAAAACCATTCCTAATACAACTTAGGTAATTAATTAAAAAAA
AACGGGCCTGGGTAACAGTTTCGTCATGATTTCGAACAACAGATTGAAACCGGTGGTTTC
TCTGTAGCAAAAAAAATTTCAGATGATCCATGATCACCTATGTATTCACACACAGGGCTT
GTGCTTGTGCTTCCTTCTTTTTCTTTCTTTATCGGATGTTGCTATTTTCTCTACTTATAA
AACTAAAGAGAATTTCTTAATCCGGAAAAATAGAATCAAACTTCAACGATCAGATAATTA
ATCTGGTTCATCTTCAAGCCATGTCTTCCATTGGAGGGTAGTTAAGGTCGAGATCAAAGT
TTCTACCACCAGCTTTTATAACAACACCGCTTTCATAGTGGTTCAGATCGATCACCGAGG
ACGAGTCTGAGTCGCTCTGGGCTCCGGCCACCGCCTGGATCTCACTCGCCGCCACGGGAT
GATTGTAGGTGTGAAAATCGAAACCGTAGCGTTGGGAGGCAGGGGAACCACCCACCATGC
CGGCACGC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002879A_C01 KMC002879A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata] 59 6e-08
gb|AAD00708.1| ethylene-responsive element binding protein homol... 56 4e-07
ref|NP_188139.1| ethylene responsive element binding factor 4 (A... 41 0.014
dbj|BAB03248.1| ethylene responsive element binding factor3 [Ory... 39 0.069
gb|AAM19703.1|AF499716_1 ethylene responsive element binding fac... 37 0.20
>gb|AAD09248.1| EREBP-3 homolog [Stylosanthes hamata]
Length = 239
Score = 58.5 bits (140), Expect = 6e-08
Identities = 37/65 (56%), Positives = 42/65 (63%)
Frame = -2
Query: 571 RYGFDFHTYNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPP 392
++GF YN P AA+ AGAQSDSDSSSVIDLN E G V K GR LDLN PP
Sbjct: 184 QFGFG---YNRPAAAA-----AGAQSDSDSSSVIDLNQNE-GDVAKNNGRGLVLDLNEPP 234
Query: 391 MEDMA 377
++MA
Sbjct: 235 PQEMA 239
>gb|AAD00708.1| ethylene-responsive element binding protein homolog [Stylosanthes
hamata]
Length = 238
Score = 55.8 bits (133), Expect = 4e-07
Identities = 36/65 (55%), Positives = 40/65 (61%)
Frame = -2
Query: 571 RYGFDFHTYNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPP 392
++GF YN P AA GAQSDSDSSSVIDLN E G V K GR LDLN PP
Sbjct: 185 QFGFG---YNRPAAA-------GAQSDSDSSSVIDLNQNE-GDVAKNNGRGLVLDLNEPP 233
Query: 391 MEDMA 377
++MA
Sbjct: 234 PQEMA 238
>ref|NP_188139.1| ethylene responsive element binding factor 4 (AtERF4); protein id:
At3g15210.1, supported by cDNA: 22775., supported by
cDNA: gi_2281634, supported by cDNA: gi_3434972
[Arabidopsis thaliana] gi|7531110|sp|O80340|ERF4_ARATH
Ethylene responsive element binding factor 4 (AtERF4)
gi|25453552|pir||T52019 ethylene responsive element
binding factor 4 [validated] - Arabidopsis thaliana
gi|3434973|dbj|BAA32421.1| ethylene responsive element
binding factor 4 [Arabidopsis thaliana]
gi|9294248|dbj|BAB02150.1| ethylene responsive element
binding factor 4 -like protein [Arabidopsis thaliana]
gi|21592357|gb|AAM64308.1| ethylene responsive element
binding factor AtERF4 [Arabidopsis thaliana]
gi|22655162|gb|AAM98171.1| ethylene responsive element
binding factor 4 (AtERF4) [Arabidopsis thaliana]
Length = 222
Score = 40.8 bits (94), Expect = 0.014
Identities = 24/57 (42%), Positives = 32/57 (56%)
Frame = -2
Query: 547 YNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA 377
+ PV + GAQSDSDSSSV+D +E G ++ + DLDLN PP + A
Sbjct: 171 FRSPVVHVATKMACGAQSDSDSSSVVD---FEGG--MEKRSQLLDLDLNLPPPSEQA 222
>dbj|BAB03248.1| ethylene responsive element binding factor3 [Oryza sativa]
gi|10567106|dbj|BAB16083.1| osERF3 [Oryza sativa]
gi|20160965|dbj|BAB89900.1| ethylene-responsive element
binding factor 3 [Oryza sativa (japonica
cultivar-group)]
Length = 235
Score = 38.5 bits (88), Expect = 0.069
Identities = 23/46 (50%), Positives = 25/46 (54%)
Frame = -2
Query: 529 ASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPP 392
A + A AQSDSDSSSV+DL V FDLDLN PP
Sbjct: 187 APPVTVAAVAQSDSDSSSVVDLAPSPPAVTANKAAA-FDLDLNRPP 231
>gb|AAM19703.1|AF499716_1 ethylene responsive element binding factor 4-like protein
[Thellungiella halophila]
Length = 195
Score = 37.0 bits (84), Expect = 0.20
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = -2
Query: 583 PASQRYGFDFHTYNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDL 404
P ++R + ++ P AA+ A G QS+SDSSSV+D +E G K R DLDL
Sbjct: 137 PVARRPVYFYNMTTFPAAAA---ATCGVQSESDSSSVVD---FECGAEKKY--RPLDLDL 188
Query: 403 NYPP 392
N P
Sbjct: 189 NLAP 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,316,511
Number of Sequences: 1393205
Number of extensions: 11244150
Number of successful extensions: 34374
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 32795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34329
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GNf049h04 |
BP071028 |
1 |
449 |
| 2 |
GNf080g04 |
BP073295 |
11 |
117 |
| 3 |
MR030a07_f |
BP078281 |
19 |
445 |
| 4 |
GNf053b12 |
BP071297 |
23 |
533 |
| 5 |
GNf074c03 |
BP072826 |
24 |
565 |
| 6 |
GNf003c02 |
BP067577 |
25 |
224 |
| 7 |
GNf068h11 |
BP072446 |
30 |
530 |
| 8 |
MR040d08_f |
BP079093 |
30 |
516 |
| 9 |
SPD055g05_f |
BP048406 |
30 |
527 |
| 10 |
MR040g05_f |
BP079112 |
30 |
458 |
| 11 |
GNf058e01 |
BP071679 |
30 |
456 |
| 12 |
MR045h02_f |
BP079511 |
30 |
559 |
| 13 |
MR015f03_f |
BP077121 |
30 |
450 |
| 14 |
GNf057g02 |
BP071635 |
30 |
378 |
| 15 |
GNf057g12 |
BP071641 |
30 |
450 |
| 16 |
MR081b06_f |
BP082207 |
30 |
411 |
| 17 |
MR022c11_f |
BP077668 |
30 |
491 |
| 18 |
GNf088a07 |
BP073831 |
30 |
445 |
| 19 |
GNf048g05 |
BP070938 |
30 |
426 |
| 20 |
MR071b02_f |
BP081431 |
30 |
418 |
| 21 |
MR095e07_f |
BP083302 |
30 |
415 |
| 22 |
MR067e06_f |
BP081160 |
32 |
533 |
| 23 |
MFB025f06_f |
BP035823 |
32 |
584 |
| 24 |
MR075h03_f |
BP081803 |
35 |
567 |
| 25 |
MR038d10_f |
BP078944 |
39 |
453 |
| 26 |
MR065b01_f |
BP080966 |
39 |
430 |
| 27 |
GNf044f06 |
BP070622 |
45 |
455 |
| 28 |
GNf007h12 |
BP067918 |
63 |
579 |
| 29 |
MFB068d05_f |
BP038931 |
67 |
627 |
| 30 |
GNf051h01 |
BP071185 |
98 |
536 |
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Lotus japonicus
Kazusa DNA Research Institute