Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002877A_C01 KMC002877A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans] 32 1.4
ref|XP_195702.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box pol... 30 5.2
ref|XP_146292.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box pol... 30 5.2
>gb|AAC38975.1| NADH dehydrogenase subunit 5 [Bodo saltans]
Length = 212
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/77 (32%), Positives = 34/77 (43%)
Frame = -2
Query: 244 VVFCFFFFFLYHEMLGSFKFSHFFKNQCN*CRLYMNQFQ*N*LCRAYATCFHLFC**TFY 65
++FC FFLY LG F F + C + + F LC + CF +FC FY
Sbjct: 92 LLFCCLDFFLYFVFLGFFYFLMY-------CLFFFSFFDFVFLCVVFC-CFFVFC---FY 140
Query: 64 GSQLQLSLFVIYLIILC 14
G L F + + LC
Sbjct: 141 GC-LFFYFFNLDCVYLC 156
>ref|XP_195702.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18; RNA
helicase (putative), (Myc-regulated DEAD box protein);
ATP-dependent RNA helicase DDX18 [Homo sapiens] [Mus
musculus]
Length = 163
Score = 30.4 bits (67), Expect = 5.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 214 KERKKKNKIQQWEIYLLQFNDYSKSNISNTSSP 312
K K+ NK+QQW + L + +D + S + N + P
Sbjct: 67 KTEKQNNKLQQWNLKLQEASDTTMSQLQNGAVP 99
>ref|XP_146292.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18
(Myc-regulated) [Mus musculus]
Length = 221
Score = 30.4 bits (67), Expect = 5.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 214 KERKKKNKIQQWEIYLLQFNDYSKSNISNTSSP 312
K K+ NK+QQW + L + +D + S + N + P
Sbjct: 119 KTEKQNNKLQQWNLKLQEASDTTMSQLQNGAVP 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,134,050
Number of Sequences: 1393205
Number of extensions: 5930176
Number of successful extensions: 14481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14435
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
