Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002873A_C01 KMC002873A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86558.1| hypothetical protein~similar to Arabidopsis thal... 42 0.007
ref|NP_702725.1| hypothetical protein [Plasmodium falciparum 3D7... 30 0.34
emb|CAB89116.1| hypothetical protein [Nicotiana alata] 36 0.37
pir||T07613 protein WSI724 - rice gi|537403|dbj|BAA05539.1| WSI7... 36 0.37
gb|AAB66889.1| water-stress inducible protein [Oryza sativa] 36 0.37
>dbj|BAB86558.1| hypothetical protein~similar to Arabidopsis thaliana
chromosome4,At4g38730 [Oryza sativa (japonica
cultivar-group)] gi|20146506|dbj|BAB89285.1| P0491F11.21
[Oryza sativa (japonica cultivar-group)]
Length = 322
Score = 41.6 bits (96), Expect = 0.007
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = -1
Query: 552 RVSWYIQGHGEPWKQKEEDVPPLHLITIIRPDHF 451
++ W+IQG+G+ KQKE+D P +IT++R D+F
Sbjct: 288 KIYWHIQGNGDIGKQKEDDSLPCDIITVMRQDYF 321
>ref|NP_702725.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498190|emb|CAD49161.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1779
Score = 30.0 bits (66), Expect(2) = 0.34
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +3
Query: 15 KHNLGKLSMNDKFNVNY*NN-CILQYTRITFYHLPKARKHSSILQKEKKKQKDW 173
++NL ++ K Y N ++ + R + Y++ ARK ++ +K KK++K W
Sbjct: 236 RNNLNNVNKLRKRKTKYDKNEKVMFHKRFSSYNMGSARKEKALSKKAKKREKLW 289
Score = 24.6 bits (52), Expect(2) = 0.34
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +1
Query: 154 KKNKKTGCSEKINKKVHGEKGIQDDYKKEKKS 249
+ N K EKI KVH + K+EKK+
Sbjct: 330 ENNLKNEKLEKIQMKVHNDTSYLQKLKREKKN 361
>emb|CAB89116.1| hypothetical protein [Nicotiana alata]
Length = 87
Score = 35.8 bits (81), Expect = 0.37
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 142 YKKKKKNKKTGCSEKINKKVHGEKGIQDDYKKEKK 246
+K+KKK K G EKI +K+HGE + KK+KK
Sbjct: 27 HKEKKKEKGEGHREKIKEKLHGEDHKDGEEKKKKK 61
>pir||T07613 protein WSI724 - rice gi|537403|dbj|BAA05539.1| WSI724 protein
induced by water stress [Oryza sativa (japonica
cultivar-group)]
Length = 92
Score = 35.8 bits (81), Expect = 0.37
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 142 YKKKKKNKKTGCSEKINKKVHGEKGIQDDYKKEKKSRQIITPLKHGKSSHH 294
+ KK K G EKI K+ G+ G ++ KEKK ++ KHG+ HH
Sbjct: 31 HHKKDGEHKEGVVEKIKDKITGDHGDGGEH-KEKKDKKKKKEKKHGEEGHH 80
>gb|AAB66889.1| water-stress inducible protein [Oryza sativa]
Length = 86
Score = 35.8 bits (81), Expect = 0.37
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 142 YKKKKKNKKTGCSEKINKKVHGEKGIQDDYKKEKKSRQIITPLKHGKSSHH 294
+ KK K G EKI K+ G+ G ++ KEKK ++ KHG+ HH
Sbjct: 25 HHKKDGEHKEGVVEKIKDKITGDHGDGGEH-KEKKDKKKKKEKKHGEEGHH 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,312,459
Number of Sequences: 1393205
Number of extensions: 11247576
Number of successful extensions: 33935
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 30869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33525
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
