Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002872A_C01 KMC002872A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76420.1| multidrug resistance protein [Cicer arietinum] 211 2e-54
ref|NP_176961.1| ABC transporter family protein; protein id: At1... 183 4e-46
ref|NP_622008.1| ABC-type phosphate transport system, ATPase com... 102 1e-21
gb|ZP_00111233.1| hypothetical protein [Nostoc punctiforme] 90 5e-18
ref|NP_490421.1| ABC transporter ATP-binding protein, hemolysin ... 89 1e-17
>dbj|BAA76420.1| multidrug resistance protein [Cicer arietinum]
Length = 261
Score = 211 bits (536), Expect = 2e-54
Identities = 111/145 (76%), Positives = 121/145 (82%), Gaps = 4/145 (2%)
Frame = +2
Query: 26 CREHLVQVDGYAANGNAT---KPKFHITNLTKFSDDG-VPILKGIHLDIPKGVIVGVIGP 193
CREHL+ V+ + KPKF I NL K SDDG + IL GI LDIPKGVIVG+IGP
Sbjct: 2 CREHLLDVEEQHYDEEEDLKRKPKFQIQNLRKLSDDGKIHILNGITLDIPKGVIVGIIGP 61
Query: 194 SGSGKSTLLRALNRLWEPPSASVFLDARDICHLDVLSLRRKVGMLFQLPALFEGTVADNV 373
SGSGKSTLLRALNRLWEPPS+SVFLDA+DICHLDVLSLRRKV MLFQLPALFEGTVA+NV
Sbjct: 62 SGSGKSTLLRALNRLWEPPSSSVFLDAQDICHLDVLSLRRKVAMLFQLPALFEGTVAENV 121
Query: 374 RSGPQLRGQKLTDDEVRKLLIMADL 448
R GPQLRG KLTDD+V KLL+MADL
Sbjct: 122 RYGPQLRGIKLTDDDVSKLLLMADL 146
>ref|NP_176961.1| ABC transporter family protein; protein id: At1g67940.1, supported
by cDNA: 25530. [Arabidopsis thaliana]
gi|25404687|pir||C96702 probable ABC transporter
T23K23.21 [imported] - Arabidopsis thaliana
gi|12324076|gb|AAG52004.1|AC012563_14 putative ABC
transporter; 66585-65723 [Arabidopsis thaliana]
gi|21554406|gb|AAM63511.1| putative ABC transporter
[Arabidopsis thaliana] gi|26450485|dbj|BAC42356.1|
putative ABC transporter [Arabidopsis thaliana]
gi|28827588|gb|AAO50638.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 263
Score = 183 bits (465), Expect = 4e-46
Identities = 92/140 (65%), Positives = 115/140 (81%)
Frame = +2
Query: 29 REHLVQVDGYAANGNATKPKFHITNLTKFSDDGVPILKGIHLDIPKGVIVGVIGPSGSGK 208
REHLV V +G+ +PK + +LT+ +DDG ILKG+ +DIPKG+IVGVIGPSGSGK
Sbjct: 14 REHLVDV---VVSGS--EPKIRVHDLTRVADDGSRILKGVTIDIPKGMIVGVIGPSGSGK 68
Query: 209 STLLRALNRLWEPPSASVFLDARDICHLDVLSLRRKVGMLFQLPALFEGTVADNVRSGPQ 388
ST LR+LNRLWEPP ++VFLD DI ++DV++LRR+VGMLFQLP LF+GTVADNVR GP
Sbjct: 69 STFLRSLNRLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPN 128
Query: 389 LRGQKLTDDEVRKLLIMADL 448
LRG+KL+D+EV KLL +ADL
Sbjct: 129 LRGEKLSDEEVYKLLSLADL 148
>ref|NP_622008.1| ABC-type phosphate transport system, ATPase component
[Thermoanaerobacter tengcongensis]
gi|20515304|gb|AAM23612.1| ABC-type phosphate transport
system, ATPase component [Thermoanaerobacter
tengcongensis]
Length = 239
Score = 102 bits (253), Expect = 1e-21
Identities = 48/97 (49%), Positives = 68/97 (69%)
Frame = +2
Query: 122 DGVPILKGIHLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDARDICHLDVL 301
DG ILK ++ K I V+GPSG+GKST+L+ +NRL EP ++F++ + ++DV+
Sbjct: 13 DGKYILKNVYFKFEKNGIYTVVGPSGAGKSTMLKLINRLIEPTEGAIFINGVEYKNIDVI 72
Query: 302 SLRRKVGMLFQLPALFEGTVADNVRSGPQLRGQKLTD 412
LRRK+GM+FQ P LFEGTV +N+ GP LRG+K D
Sbjct: 73 LLRRKIGMVFQRPFLFEGTVKENIELGPSLRGEKNID 109
>gb|ZP_00111233.1| hypothetical protein [Nostoc punctiforme]
Length = 984
Score = 90.1 bits (222), Expect = 5e-18
Identities = 43/90 (47%), Positives = 62/90 (68%)
Frame = +2
Query: 113 FSDDGVPILKGIHLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDARDICHL 292
FS++G L I+LD P G VG++G SGSGKSTLL+ L RL+EP S + +D DI +
Sbjct: 753 FSENGPMQLCNINLDFPAGSFVGIVGQSGSGKSTLLKLLPRLYEPKSGKILIDGYDISKV 812
Query: 293 DVLSLRRKVGMLFQLPALFEGTVADNVRSG 382
++ SLRR++GM+ Q LF+GT+ +N+ G
Sbjct: 813 ELYSLRRQIGMVLQDTLLFDGTIRENISLG 842
>ref|NP_490421.1| ABC transporter ATP-binding protein, hemolysin secretion protein
[Nostoc sp. PCC 7120] gi|25384933|pir||AC2517
hypothetical protein hlyB [imported] - Nostoc sp. (strain
PCC 7120) plasmid pCC7120alpha
Length = 975
Score = 89.0 bits (219), Expect = 1e-17
Identities = 44/103 (42%), Positives = 66/103 (63%)
Frame = +2
Query: 113 FSDDGVPILKGIHLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVFLDARDICHL 292
F + G L I+LD P G +G++G SGSGKSTLL+ L RL+EP S + +D DI +
Sbjct: 745 FLEHGPLQLSNINLDFPAGSFIGIVGQSGSGKSTLLKLLPRLYEPKSGKILIDGYDIAKV 804
Query: 293 DVLSLRRKVGMLFQLPALFEGTVADNVRSGPQLRGQKLTDDEV 421
++ SLRR++GM+ Q LF+GTV +N+ G + +D+E+
Sbjct: 805 ELYSLRRQIGMVLQDTLLFDGTVRENIALG----SSEASDEEI 843
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,656,085
Number of Sequences: 1393205
Number of extensions: 11152984
Number of successful extensions: 79721
Number of sequences better than 10.0: 10986
Number of HSP's better than 10.0 without gapping: 67853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77989
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
