Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002871A_C01 KMC002871A_c01
(912 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum] 154 3e-47
pir||C84638 probable WRKY-type DNA binding protein [imported] - ... 154 8e-45
ref|NP_565574.1| WRKY family transcription factor; protein id: A... 154 8e-45
gb|AAD32676.1|AF140553_1 DNA-binding protein WRKY3 [Avena sativa] 143 2e-44
dbj|BAB16432.1| WRKY transcription factor Nt-SubD48 [Nicotiana t... 154 3e-42
>dbj|BAA77358.1| DNA-binding protein NtWRKY3 [Nicotiana tabacum]
Length = 328
Score = 154 bits (389), Expect(2) = 3e-47
Identities = 68/82 (82%), Positives = 75/82 (90%)
Frame = -3
Query: 685 RKGNQRVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARK 506
+K RVK+ +R+PA+SS+IADIP DEYSWRKYGQKPIKGSPYPRGYYKCS+VRGCPARK
Sbjct: 224 KKRKSRVKKVVRIPAISSRIADIPGDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARK 283
Query: 505 HVERAQDDPNMLIVTYEGEHRH 440
HVERA DDP MLIVTYEGEHRH
Sbjct: 284 HVERAMDDPAMLIVTYEGEHRH 305
Score = 57.4 bits (137), Expect(2) = 3e-47
Identities = 48/112 (42%), Positives = 55/112 (48%), Gaps = 32/112 (28%)
Frame = -2
Query: 911 TLDFAKPT--------------HKDDTLTIST---TNTNSSSFKSSITADGSVSDGKIGP 783
TLDF KP +T IST T+ NSSSF SSIT +GSVS+GK G
Sbjct: 121 TLDFTKPNVDRPTGNSNAIVAVKSKETFCISTPMATSANSSSFMSSITGEGSVSNGKQGS 180
Query: 782 --FLTP-----AAKPPLSTSHRKRCHD--------AAALSSGPCHCSKKRKS 672
FL P A KPP+S KRC + + SG CHC KKRKS
Sbjct: 181 SVFLPPAPSVSAGKPPIS---GKRCREHEPSEDISGKSNGSGKCHC-KKRKS 228
>pir||C84638 probable WRKY-type DNA binding protein [imported] - Arabidopsis
thaliana
Length = 410
Score = 154 bits (388), Expect(2) = 8e-45
Identities = 69/79 (87%), Positives = 74/79 (93%)
Frame = -3
Query: 670 RVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERA 491
R+K+T+RVPAVS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA
Sbjct: 224 RMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERA 283
Query: 490 QDDPNMLIVTYEGEHRHQQ 434
DD MLIVTYEGEHRH Q
Sbjct: 284 LDDSTMLIVTYEGEHRHHQ 302
Score = 49.7 bits (117), Expect(2) = 8e-45
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 29/109 (26%)
Frame = -2
Query: 911 TLDFAKP------THKDDTLTIS----TTNTNSSSFKSSITADGSVSDGKIGPFLTPA-- 768
TLDF +P T + + + + ++NSS S+IT DGSVS G FL PA
Sbjct: 116 TLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKGS-SIFLAPAPA 174
Query: 767 ------AKPPLS-TSHRKRC--HD--------AAALSSGPCHCSKKRKS 672
KPPLS +RKRC HD + +G CHC K RK+
Sbjct: 175 VPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKN 223
>ref|NP_565574.1| WRKY family transcription factor; protein id: At2g24570.1,
supported by cDNA: gi_15991743 [Arabidopsis thaliana]
gi|15991744|gb|AAL13049.1|AF425836_1 WRKY transcription
factor 17 [Arabidopsis thaliana]
gi|20197975|gb|AAD23889.2| putative WRKY-type DNA
binding protein [Arabidopsis thaliana]
Length = 321
Score = 154 bits (388), Expect(2) = 8e-45
Identities = 69/79 (87%), Positives = 74/79 (93%)
Frame = -3
Query: 670 RVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERA 491
R+K+T+RVPAVS+KIADIPPDEYSWRKYGQKPIKGSP+PRGYYKCST RGCPARKHVERA
Sbjct: 224 RMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERA 283
Query: 490 QDDPNMLIVTYEGEHRHQQ 434
DD MLIVTYEGEHRH Q
Sbjct: 284 LDDSTMLIVTYEGEHRHHQ 302
Score = 49.7 bits (117), Expect(2) = 8e-45
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 29/109 (26%)
Frame = -2
Query: 911 TLDFAKP------THKDDTLTIS----TTNTNSSSFKSSITADGSVSDGKIGPFLTPA-- 768
TLDF +P T + + + + ++NSS S+IT DGSVS G FL PA
Sbjct: 116 TLDFTRPSVFGAKTKSSEVVEFAKESFSVSSNSSFMSSAITGDGSVSKGS-SIFLAPAPA 174
Query: 767 ------AKPPLS-TSHRKRC--HD--------AAALSSGPCHCSKKRKS 672
KPPLS +RKRC HD + +G CHC K RK+
Sbjct: 175 VPVTSSGKPPLSGLPYRKRCFEHDHSEGFSGKISGSGNGKCHCKKSRKN 223
>gb|AAD32676.1|AF140553_1 DNA-binding protein WRKY3 [Avena sativa]
Length = 321
Score = 143 bits (361), Expect(2) = 2e-44
Identities = 63/82 (76%), Positives = 72/82 (86%)
Frame = -3
Query: 685 RKGNQRVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARK 506
++ RVK+ RVPA+SSK A+IP D++SWRKYGQKPIKGSPYPRGYYKCSTVRGCPARK
Sbjct: 220 KRRKSRVKRMTRVPAISSKAAEIPADDFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARK 279
Query: 505 HVERAQDDPNMLIVTYEGEHRH 440
HVER DP+MLIVTYEG+HRH
Sbjct: 280 HVERDPSDPSMLIVTYEGDHRH 301
Score = 58.9 bits (141), Expect(2) = 2e-44
Identities = 40/101 (39%), Positives = 54/101 (52%), Gaps = 21/101 (20%)
Frame = -2
Query: 911 TLDFAKPT----HKDDTLTISTTNTNSSSFKSSITADGSVSDGKIG--------PFLTPA 768
TLDF+K +KD ++S SSSF SS+T DGSVS+G+ G P
Sbjct: 127 TLDFSKSASVFGNKDAAYSVSAA---SSSFLSSVTGDGSVSNGRGGGSSLMLPPPPSASC 183
Query: 767 AKPPLSTS---HRKRCHD------AAALSSGPCHCSKKRKS 672
KPPL+ + +++CH+ A S G CHCSK+RKS
Sbjct: 184 GKPPLAAAAAGPKRKCHEHAHSENVAGASGGRCHCSKRRKS 224
>dbj|BAB16432.1| WRKY transcription factor Nt-SubD48 [Nicotiana tabacum]
Length = 350
Score = 154 bits (390), Expect(2) = 3e-42
Identities = 68/88 (77%), Positives = 76/88 (86%)
Frame = -3
Query: 688 PRKGNQRVKQTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPAR 509
P+K RVK+ +RVPA+S K+ADIPPD+YSWRKYGQKPIKGSP+PRGYYKCS+VRGCPAR
Sbjct: 252 PKKRKSRVKRVVRVPAISMKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPAR 311
Query: 508 KHVERAQDDPNMLIVTYEGEHRHQQQQT 425
KHVERA DDP MLIVTYEGEH H T
Sbjct: 312 KHVERALDDPTMLIVTYEGEHNHSHSIT 339
Score = 40.0 bits (92), Expect(2) = 3e-42
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 20/91 (21%)
Frame = -2
Query: 884 KDDTLTISTTNTN-SSSFKSSITADG-----SVSDG-KIGPFLT--PAAKPPLSTSHRKR 732
K+ + TI+ + + ++SF SS+T + S+S G +I T A +PPLSTS KR
Sbjct: 168 KESSTTINFASASPANSFMSSLTGETESLQQSLSSGFQITNLSTVSSAGRPPLSTSSFKR 227
Query: 731 -----------CHDAAALSSGPCHCSKKRKS 672
C+ A SSG CHC KKRKS
Sbjct: 228 KCSSMDDTALKCNSAGG-SSGRCHCPKKRKS 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 898,035,668
Number of Sequences: 1393205
Number of extensions: 23914941
Number of successful extensions: 440367
Number of sequences better than 10.0: 6331
Number of HSP's better than 10.0 without gapping: 122775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269887
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49918505760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
