Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002869A_C01 KMC002869A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37828.1| HEN4 [Arabidopsis thaliana] 119 2e-26
ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Ara... 119 2e-26
ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Ara... 86 2e-16
gb|AAM92828.1| putative RNA-binding protein [Oryza sativa (japon... 80 2e-14
dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana] 64 1e-09
>gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 119 bits (298), Expect = 2e-26
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -1
Query: 532 GLTSRRGGLELVSGSKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQ 353
GL+S R G L SG KSAIVTNTTVEI VP + + VYGE G NL +LRQISGA+V++H+
Sbjct: 766 GLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHE 825
Query: 352 PHPGSSERIIVISGSPDETQAAQSLLQSFILSG 254
P G+S+RIIVISG+PD+TQAAQ+LL +FIL+G
Sbjct: 826 PPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 858
Score = 39.3 bits (90), Expect = 0.030
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -1
Query: 475 VTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISGSPD 302
V + ++ P + +V G++G+ + +L+Q +GAK+ V +P GS +R+I I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Arabidopsis thaliana]
Length = 857
Score = 119 bits (298), Expect = 2e-26
Identities = 61/93 (65%), Positives = 76/93 (81%)
Frame = -1
Query: 532 GLTSRRGGLELVSGSKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQ 353
GL+S R G L SG KSAIVTNTTVEI VP + + VYGE G NL +LRQISGA+V++H+
Sbjct: 754 GLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHE 813
Query: 352 PHPGSSERIIVISGSPDETQAAQSLLQSFILSG 254
P G+S+RIIVISG+PD+TQAAQ+LL +FIL+G
Sbjct: 814 PPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 846
Score = 39.3 bits (90), Expect = 0.030
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = -1
Query: 475 VTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISGSPD 302
V + ++ P + +V G++G+ + +L+Q +GAK+ V +P GS +R+I I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Arabidopsis thaliana]
gi|25405483|pir||D96554 hypothetical protein F19C24.19
[imported] - Arabidopsis thaliana
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical
protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical
protein; 15135-12645 [Arabidopsis thaliana]
Length = 621
Score = 86.3 bits (212), Expect = 2e-16
Identities = 40/80 (50%), Positives = 59/80 (73%)
Frame = -1
Query: 493 GSKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVIS 314
GS++ ++T+ VEIV+P+ + VYGEN SNL ++Q+SGA VVVH P G++E ++V+S
Sbjct: 540 GSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVS 599
Query: 313 GSPDETQAAQSLLQSFILSG 254
G+ D+ AQSLL +FIL G
Sbjct: 600 GTSDQAHFAQSLLHAFILCG 619
Score = 38.5 bits (88), Expect = 0.051
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = -1
Query: 490 SKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISG 311
++ + ++ P D + S+ G+ G+ + L+ SGA + V P S ERIIVIS
Sbjct: 268 NRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVIS- 326
Query: 310 SPDETQAAQSLLQSFIL 260
+ + + SL Q ++
Sbjct: 327 ARENLERRHSLAQDGVM 343
>gb|AAM92828.1| putative RNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 762
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/71 (54%), Positives = 51/71 (70%)
Frame = -1
Query: 463 TVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISGSPDETQAAQ 284
+VE +P ++SV G G NLA +RQISGA+V +H+ HPGSSE I+ I G PD+ +AAQ
Sbjct: 677 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 736
Query: 283 SLLQSFILSGS 251
SLLQ FI + S
Sbjct: 737 SLLQGFIGASS 747
Score = 39.7 bits (91), Expect = 0.023
Identities = 25/73 (34%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = -1
Query: 493 GSKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVIS 314
G+ S+ T I+ P I SV G G + LR + AK+ V PG+ ER+I+I
Sbjct: 37 GTISSEPIETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIF 96
Query: 313 GSPDET-QAAQSL 278
+T +AAQ++
Sbjct: 97 NYSSQTEEAAQNI 109
>dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 63.9 bits (154), Expect = 1e-09
Identities = 30/74 (40%), Positives = 51/74 (68%)
Frame = -1
Query: 478 IVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISGSPDE 299
+VT +T+E+V+PE + + ++ + LA++ + SGA V + + P ++ II ISG+P++
Sbjct: 573 LVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQ 632
Query: 298 TQAAQSLLQSFILS 257
+ AQSLLQ FILS
Sbjct: 633 AERAQSLLQGFILS 646
Score = 40.4 bits (93), Expect = 0.013
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = -1
Query: 514 GGLELVSGSKSAIVTNTTVEIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSS 335
GG S S + TT I+ + V G++G+ + +RQ +GA + VH+ PG +
Sbjct: 52 GGNGRPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDA 111
Query: 334 ERIIVISGS----PDETQAAQSLLQSFILS 257
ERII IS + PD + S Q + S
Sbjct: 112 ERIIEISDNRRRDPDGRMPSFSPAQEALFS 141
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 457 EIVVPEDTIDSVYGENGSNLARLRQISGAKVVVHQPHPGSSERIIVISG--SPDE 299
+I+ P D I V GE+ + L+ G V V P GS E+II IS +PD+
Sbjct: 328 QILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDD 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,503,272
Number of Sequences: 1393205
Number of extensions: 9386152
Number of successful extensions: 29071
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 28247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29021
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
