Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002868A_C01 KMC002868A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA81687.1| expressed in cucumber hypocotyls [Cucumis sativus] 142 2e-33
gb|AAD32147.1|AF123509_1 Nt-iaa4.1 deduced protein [Nicotiana ta... 141 5e-33
gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tab... 141 5e-33
ref|NP_187124.1| auxin-induced protein; protein id: At3g04730.1,... 139 2e-32
gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremul... 137 8e-32
>dbj|BAA81687.1| expressed in cucumber hypocotyls [Cucumis sativus]
Length = 230
Score = 142 bits (359), Expect = 2e-33
Identities = 71/86 (82%), Positives = 79/86 (91%)
Frame = -2
Query: 586 SFTTLNGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESCK 407
SFTT+ G+CGSQ M KDFMNESKL+DLL+GSDYVPTY+DKDGDWML+GDVPWEMFVESCK
Sbjct: 148 SFTTI-GNCGSQEM-KDFMNESKLMDLLSGSDYVPTYEDKDGDWMLVGDVPWEMFVESCK 205
Query: 406 RLRIMKGSEAIGLAPKAQWTKCKSRS 329
RLRIMKG EAIGLAP+A KCK+RS
Sbjct: 206 RLRIMKGKEAIGLAPRAM-EKCKNRS 230
>gb|AAD32147.1|AF123509_1 Nt-iaa4.1 deduced protein [Nicotiana tabacum]
Length = 220
Score = 141 bits (356), Expect = 5e-33
Identities = 71/87 (81%), Positives = 78/87 (89%)
Frame = -2
Query: 589 SSFTTLNGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESC 410
SSFT G+CG+ G KDFMNESKLIDLLNGSDYVPTY+DKDGDWML+GDVPWEMFV+SC
Sbjct: 138 SSFTI--GNCGNHGF-KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSC 194
Query: 409 KRLRIMKGSEAIGLAPKAQWTKCKSRS 329
KRLRIMKGSEAIGLAP+A KCK+RS
Sbjct: 195 KRLRIMKGSEAIGLAPRAV-EKCKNRS 220
>gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tabacum]
Length = 240
Score = 141 bits (356), Expect = 5e-33
Identities = 71/87 (81%), Positives = 78/87 (89%)
Frame = -2
Query: 589 SSFTTLNGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESC 410
SSFT G+CG+ G KDFMNESKLIDLLNGSDYVPTY+DKDGDWML+GDVPWEMFV+SC
Sbjct: 158 SSFTI--GNCGTHGF-KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSC 214
Query: 409 KRLRIMKGSEAIGLAPKAQWTKCKSRS 329
KRLRIMKGSEAIGLAP+A KCK+RS
Sbjct: 215 KRLRIMKGSEAIGLAPRAV-EKCKNRS 240
>ref|NP_187124.1| auxin-induced protein; protein id: At3g04730.1, supported by cDNA:
32727., supported by cDNA: gi_12083209, supported by
cDNA: gi_14030658, supported by cDNA: gi_2618720
[Arabidopsis thaliana] gi|11131089|sp|O24407|AXIG_ARATH
Auxin-responsive protein IAA16 (Indoleacetic
acid-induced protein 16) gi|2618721|gb|AAB84353.1| IAA16
[Arabidopsis thaliana]
gi|6175173|gb|AAF04899.1|AC011437_14 auxin-induced
protein [Arabidopsis thaliana]
gi|12083210|gb|AAG48764.1|AF332400_1 putative
auxin-induced protein IAA16 [Arabidopsis thaliana]
gi|14030659|gb|AAK53004.1|AF375420_1 AT3g04730/F7O18_22
[Arabidopsis thaliana] gi|21592802|gb|AAM64751.1|
auxin-induced protein [Arabidopsis thaliana]
gi|23507781|gb|AAN38694.1| At3g04730/F7O18_22
[Arabidopsis thaliana]
Length = 236
Score = 139 bits (351), Expect = 2e-32
Identities = 71/87 (81%), Positives = 78/87 (89%)
Frame = -2
Query: 589 SSFTTLNGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESC 410
SSFT G+ G QGM KDFMNESKLIDLLNGSDYVPTY+DKDGDWML+GDVPWEMFV+SC
Sbjct: 154 SSFTI--GNYGPQGM-KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSC 210
Query: 409 KRLRIMKGSEAIGLAPKAQWTKCKSRS 329
KR+RIMKGSEAIGLAP+A KCK+RS
Sbjct: 211 KRIRIMKGSEAIGLAPRA-LEKCKNRS 236
>gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]
Length = 249
Score = 137 bits (346), Expect = 8e-32
Identities = 70/87 (80%), Positives = 77/87 (88%)
Frame = -2
Query: 589 SSFTTLNGSCGSQGMMKDFMNESKLIDLLNGSDYVPTYQDKDGDWMLLGDVPWEMFVESC 410
SSFT G+CGSQG KDFMNESKLIDLLN S+YVPTY+DKDGDWML+GDVPW MFV+SC
Sbjct: 167 SSFTI--GNCGSQGT-KDFMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSC 223
Query: 409 KRLRIMKGSEAIGLAPKAQWTKCKSRS 329
KRLRIMKGSEAIGLAP+A KCK+RS
Sbjct: 224 KRLRIMKGSEAIGLAPRAV-EKCKNRS 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,383,177
Number of Sequences: 1393205
Number of extensions: 11741681
Number of successful extensions: 38405
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 36381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38352
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
