Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002863A_C01 KMC002863A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00117629.1| hypothetical protein [Cytophaga hutchinsonii] 32 3.9
ref|ZP_00088727.1| hypothetical protein [Azotobacter vinelandii] 31 8.6
ref|XP_227116.1| similar to RIKEN cDNA 1700006A11 [Mus musculus]... 31 8.6
ref|NP_507198.1| 7 transmembrane chemoreceptor family member fam... 31 8.6
gb|EAA41571.1| GLP_546_46142_47371 [Giardia lamblia ATCC 50803] 31 8.6
>ref|ZP_00117629.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 434
Score = 32.3 bits (72), Expect = 3.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 125 PLVYKLQVQNKMYPSEKMVESKSTKNDHMLGIRIINP 235
P+ YKL N YP + +K N +++GI IINP
Sbjct: 144 PITYKLDPNNHWYPDLDDLYNKVKYNPNIIGILIINP 180
>ref|ZP_00088727.1| hypothetical protein [Azotobacter vinelandii]
Length = 923
Score = 31.2 bits (69), Expect = 8.6
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 286 FLFRWEQGAWWLNHRTVNILSFGSFLPGVQLTRH 387
+LF+W G L H TV +L F +L QLTRH
Sbjct: 240 YLFQWPPG---LQHITVLLLIFSFWLTATQLTRH 270
>ref|XP_227116.1| similar to RIKEN cDNA 1700006A11 [Mus musculus] [Rattus norvegicus]
Length = 1478
Score = 31.2 bits (69), Expect = 8.6
Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Frame = +1
Query: 280 KTFLFRWEQGAWWLNHRTVNILSFGSFLPGVQLTRHSDILKRRVA--AELNHITAIHSA 450
KT F W G RT+ I +FGS L +L HS + + V+ + +HI + +
Sbjct: 74 KTIFFYWATGNALATFRTLKITNFGSVLATRKLQEHSKSIHKYVSVMSRFSHIDPLEGS 132
>ref|NP_507198.1| 7 transmembrane chemoreceptor family member family member
[Caenorhabditis elegans] gi|7506999|pir||T24391
hypothetical protein T03E6.5 - Caenorhabditis elegans
gi|3879371|emb|CAB07279.1| C. elegans SRH-269 protein
(corresponding sequence T03E6.5) [Caenorhabditis
elegans]
Length = 326
Score = 31.2 bits (69), Expect = 8.6
Identities = 19/48 (39%), Positives = 27/48 (55%)
Frame = -1
Query: 213 NIWSFFVDLLSTIFSLGYILFWTCNL*TSGGLLYIIKYLTMFKLYLLV 70
+ WS F+DL +I + YILF + S GLL +K +LYL+V
Sbjct: 48 HFWSVFLDLTISILVIPYILF-PAVVGRSLGLLEFVKVPQKLQLYLIV 94
>gb|EAA41571.1| GLP_546_46142_47371 [Giardia lamblia ATCC 50803]
Length = 409
Score = 31.2 bits (69), Expect = 8.6
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -1
Query: 420 FCCYSPLQNVRVPCKLHTRQKASKGKNVYCS 328
FCC S ++ VPCK H ++ A ++ YCS
Sbjct: 137 FCCLSSIKGQPVPCK-HRKENAFSCRHEYCS 166
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,665,226
Number of Sequences: 1393205
Number of extensions: 10061245
Number of successful extensions: 20482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20482
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
