Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002861A_C01 KMC002861A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabi... 142 6e-33
dbj|BAB01695.1| gb|AAD43153.1~gene_id:K13E13.10~similar to unkno... 142 6e-33
ref|NP_188529.1| unknown protein; protein id: At3g18990.1 [Arabi... 142 6e-33
ref|NP_564547.1| expressed protein; protein id: At1g49480.1, sup... 141 1e-32
gb|AAK68808.1| Unknown protein [Arabidopsis thaliana] 141 1e-32
>gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabidopsis thaliana]
gi|21734796|gb|AAM76973.1|AF289052_1 reduced
vernalization response 1 [Arabidopsis thaliana]
Length = 341
Score = 142 bits (357), Expect = 6e-33
Identities = 69/91 (75%), Positives = 79/91 (85%)
Frame = -1
Query: 704 YLYRGCIMYLPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLYRGGRAKLSQGWFEFPLEN 525
YLYRGCIMYLPS FAEK L+G SGFIK+Q+A+ +Q PVRCLY+ GRAK SQGW+EF LEN
Sbjct: 252 YLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLEN 310
Query: 524 HLGEGDVCVFELLRTRDVVLQVTLFRLTEEV 432
+LGEGDVCVFELLRTRD VL+VT FR+ E V
Sbjct: 311 NLGEGDVCVFELLRTRDFVLKVTAFRVNEYV 341
>dbj|BAB01695.1| gb|AAD43153.1~gene_id:K13E13.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 230
Score = 142 bits (357), Expect = 6e-33
Identities = 69/91 (75%), Positives = 79/91 (85%)
Frame = -1
Query: 704 YLYRGCIMYLPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLYRGGRAKLSQGWFEFPLEN 525
YLYRGCIMYLPS FAEK L+G SGFIK+Q+A+ +Q PVRCLY+ GRAK SQGW+EF LEN
Sbjct: 141 YLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLEN 199
Query: 524 HLGEGDVCVFELLRTRDVVLQVTLFRLTEEV 432
+LGEGDVCVFELLRTRD VL+VT FR+ E V
Sbjct: 200 NLGEGDVCVFELLRTRDFVLKVTAFRVNEYV 230
>ref|NP_188529.1| unknown protein; protein id: At3g18990.1 [Arabidopsis thaliana]
Length = 232
Score = 142 bits (357), Expect = 6e-33
Identities = 69/91 (75%), Positives = 79/91 (85%)
Frame = -1
Query: 704 YLYRGCIMYLPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLYRGGRAKLSQGWFEFPLEN 525
YLYRGCIMYLPS FAEK L+G SGFIK+Q+A+ +Q PVRCLY+ GRAK SQGW+EF LEN
Sbjct: 143 YLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLEN 201
Query: 524 HLGEGDVCVFELLRTRDVVLQVTLFRLTEEV 432
+LGEGDVCVFELLRTRD VL+VT FR+ E V
Sbjct: 202 NLGEGDVCVFELLRTRDFVLKVTAFRVNEYV 232
>ref|NP_564547.1| expressed protein; protein id: At1g49480.1, supported by cDNA:
gi_14596160 [Arabidopsis thaliana]
gi|25373244|pir||E96531 hypothetical protein F13F21.8
[imported] - Arabidopsis thaliana
gi|5430753|gb|AAD43153.1|AC007504_8 Unknown Protein
[Arabidopsis thaliana]
Length = 226
Score = 141 bits (355), Expect = 1e-32
Identities = 68/91 (74%), Positives = 78/91 (84%)
Frame = -1
Query: 704 YLYRGCIMYLPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLYRGGRAKLSQGWFEFPLEN 525
YLYRGCIMYLPS FAEK L+G SGFIKLQ+ + +Q PVRCLY+ GRAK SQGW+EF LEN
Sbjct: 137 YLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLEN 195
Query: 524 HLGEGDVCVFELLRTRDVVLQVTLFRLTEEV 432
++GEGDVCVFELLRTRD VL+VT FR+ E V
Sbjct: 196 NIGEGDVCVFELLRTRDFVLEVTAFRVNEYV 226
>gb|AAK68808.1| Unknown protein [Arabidopsis thaliana]
Length = 226
Score = 141 bits (355), Expect = 1e-32
Identities = 68/91 (74%), Positives = 78/91 (84%)
Frame = -1
Query: 704 YLYRGCIMYLPSCFAEKNLNGXSGFIKLQVADGRQXPVRCLYRGGRAKLSQGWFEFPLEN 525
YLYRGCIMYLPS FAEK L+G SGFIKLQ+ + +Q PVRCLY+ GRAK SQGW+EF LEN
Sbjct: 137 YLYRGCIMYLPSGFAEKYLSGISGFIKLQLGE-KQWPVRCLYKAGRAKFSQGWYEFTLEN 195
Query: 524 HLGEGDVCVFELLRTRDVVLQVTLFRLTEEV 432
++GEGDVCVFELLRTRD VL+VT FR+ E V
Sbjct: 196 NIGEGDVCVFELLRTRDFVLEVTAFRVNEYV 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,004,654
Number of Sequences: 1393205
Number of extensions: 11572936
Number of successful extensions: 43782
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 42150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43682
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
