>KMC002858A_C01 KMC002858A_c01
ttagtcaacaatctgagatatataaacagagtccaccccatcatcacacaacacacaaca
acatctcaaattcaaagagcATCAAATTCCAATTAACCTTTTTTTCCTAGCTTCTACTGA
TCAATTATTTCTCACAATCATGGAGAAACAGCACAAGCGGAATGGCAGCAAGATCCTGAA
AGCGGTTATAGCAGCTGAGCATGACATTTCATAACACTCCTTTATAGTCCAGGAAGGGAT
CATCACAAATCAAGAACAGATCAGAACAACGCAACCAGCAAGTGGGTTAAGCCTCATCAG
TCACGGAGGCAAGAAGGGAGTGTCTGGTCCCATGATACCTAGAACAAATCTCAAAGATGG
AGGCATTGAGAATTACAACCGAGAACCCACTTCACCAAAAAGTCTCAGTGCATGGGGCAG
ATCAAGCACAAGAAGAATCAGATAAAAAAATCCAAGTCCAAAAGGTCCGTGTCACTTCAG
AATGAGACTAGAGAATTTGCATCTACCACCAACAAAACAACCACAACATCAACATCGAA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002858A_C01 KMC002858A_c01
         (539 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB86891.1| syringolide-induced protein 14-1-1 [Glycine max]       55  5e-07
gb|EAA42018.1| GLP_68_23820_23371 [Giardia lamblia ATCC 50803]         37  0.20
gb|EAA05997.1| ebiP5621 [Anopheles gambiae str. PEST]                  35  0.76
ref|NP_055837.1| PDZ domain containing 3; KIAA0300 protein; like...    33  1.7
gb|AAC69733.1| merozoite surface protein 1 [Plasmodium falciparum]     31  8.4

>dbj|BAB86891.1| syringolide-induced protein 14-1-1 [Glycine max]
          Length = 257

 Score = 55.1 bits (131), Expect = 5e-07
 Identities = 43/103 (41%), Positives = 57/103 (54%)
 Frame = +1

Query: 223 YSPGRDHHKSRTDQNNATSKWVKPHQSRRQEGSVWSHDT*NKSQRWRH*ELQPRTHFTKK 402
           +SPGRDH KS+   +      + PH++RR+     +HD  N        E+  +   + K
Sbjct: 25  FSPGRDH-KSKPIVS------MIPHEARRK-----THDRGNNGID----EIYSQEPTSPK 68

Query: 403 SQCMGQIKHKKNQIKKSKSKRSVSLQNETREFASTTNKTTTTS 531
             CMGQIKHKK QIKKSKSK S S+  E R  AS   KT++ S
Sbjct: 69  ISCMGQIKHKKKQIKKSKSK-SKSMTKEARNVAS--KKTSSAS 108

>gb|EAA42018.1| GLP_68_23820_23371 [Giardia lamblia ATCC 50803]
          Length = 149

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 18/71 (25%), Positives = 32/71 (44%)
 Frame = +2

Query: 227 VQEGIITNQEQIRTTQPASGLSLISHGGKKGVSGPMIPRTNLKDGGIENYNREPTSPKSL 406
           +++G +  +     +    G  ++SH  +K   GP  P   ++ G I    R  +S +  
Sbjct: 21  MEDGCVVGKAVSEVSPSVPGEQVLSHAAQKHAQGPEGPSPGVQRGAIRGRPRRNSSGRGT 80

Query: 407 SAWGRSSTRRI 439
            AW R ST R+
Sbjct: 81  LAWQRPSTVRV 91

>gb|EAA05997.1| ebiP5621 [Anopheles gambiae str. PEST]
          Length = 976

 Score = 34.7 bits (78), Expect = 0.76
 Identities = 29/104 (27%), Positives = 46/104 (43%)
 Frame = +1

Query: 226 SPGRDHHKSRTDQNNATSKWVKPHQSRRQEGSVWSHDT*NKSQRWRH*ELQPRTHFTKKS 405
           S  + HH S +D   A  K    H+++ +E S  SH + + S R RH           +S
Sbjct: 191 SSSKHHHSSTSD---ADRKKDSSHRNKEKESSR-SHSSKHSSDRDRH-----------RS 235

Query: 406 QCMGQIKHKKNQIKKSKSKRSVSLQNETREFASTTNKTTTTSTS 537
               +  H K+   KS S +S S  + +   +S+  K   +STS
Sbjct: 236 SSEKERSHSKSSSSKSSSSKSKSSTSNSNNSSSSRKKEHHSSTS 279

>ref|NP_055837.1| PDZ domain containing 3; KIAA0300 protein; likely ortholog of rat
            plakophilin-related armadillo repeat protein-interacting
            PDZ protein; PDZ domain containing 2 [Homo sapiens]
            gi|12751452|gb|AAK07661.1|AF338650_1 PDZ
            domain-containing protein AIPC [Homo sapiens]
          Length = 2641

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 21/65 (32%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
 Frame = +2

Query: 272  QPASGLSLISHGGKKGVSGPMIPRTNLKDGGIENYNR--EPTSPKSLSAWGRSSTRRIR* 445
            QP +   LIS  GKKG + P   +T++  G +       +P SP+      RS  R    
Sbjct: 1030 QPMTSSDLISSPGKKGAAHPDPSKTSVDTGQVSRPENPSQPASPRVTKCKARSPVRLPHE 1089

Query: 446  KNPSP 460
             +PSP
Sbjct: 1090 GSPSP 1094

>gb|AAC69733.1| merozoite surface protein 1 [Plasmodium falciparum]
          Length = 347

 Score = 31.2 bits (69), Expect = 8.4
 Identities = 37/143 (25%), Positives = 57/143 (38%)
 Frame = +2

Query: 98  LFFLASTDQLFLTIMEKQHKRNGSKILKAVIAAEHDIS*HSFIVQEGIITNQEQIRTTQP 277
           +FFL S     +      H+     + K     +  ++ +S   +E +I N+E+I TT+ 
Sbjct: 4   IFFLCSFLFFIINTQCVTHESYQELVKKLEALEDAVLTGYSLFHKEKMILNEEEI-TTKG 62

Query: 278 ASGLSLISHGGKKGVSGPMIPRTNLKDGGIENYNREPTSPKSLSAWGRSSTRRIR*KNPS 457
           AS  S  S  G  G SGP  P       G    +R  T P+S ++ G S        +  
Sbjct: 63  ASAQSGTS--GTSGTSGPSGP------SGTSPSSRSNTLPRSNTSSGASPPADASDSDAK 114

Query: 458 PKGPCHFRMRLENLHLPPTKQPQ 526
                  R+R   L +   K PQ
Sbjct: 115 SYADLKHRVRNYLLTIKELKYPQ 137

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,662,594
Number of Sequences: 1393205
Number of extensions: 9556709
Number of successful extensions: 27259
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27161
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR067e03_f BP081157 1 381 2 GNf002b04 BP067495 188 539

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