Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002856A_C01 KMC002856A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97110.1| unknown protein [Arabidopsis thaliana] gi|2319805... 60 7e-12
ref|NP_177939.1| unknown protein; protein id: At1g78150.1 [Arabi... 58 3e-11
ref|NP_564463.1| expressed protein; protein id: At1g35780.1, sup... 50 1e-09
dbj|BAC10849.1| hypothetical protein~similar to Arabidopsis thal... 51 2e-09
gb|AAL36221.1| unknown protein [Arabidopsis thaliana] gi|2143638... 45 5e-04
>gb|AAM97110.1| unknown protein [Arabidopsis thaliana] gi|23198050|gb|AAN15552.1|
unknown protein [Arabidopsis thaliana]
Length = 274
Score = 60.5 bits (145), Expect(2) = 7e-12
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 TARVLELKGSIDIGELAPSQ-ADGDGTTKTAKKIYKEKFADLSGNDIFRGEVPPSSTEKS 393
T R L LK + ++G A SQ A+ D + KTAKKIY +KFA+LSGNDIF+G+ S+ EK
Sbjct: 175 TNRALALKDNFNLG--AESQTAEEDSSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKH 232
Query: 392 LS 387
LS
Sbjct: 233 LS 234
Score = 31.2 bits (69), Expect(2) = 7e-12
Identities = 20/43 (46%), Positives = 25/43 (57%), Gaps = 7/43 (16%)
Frame = -3
Query: 382 AKLREISGSHIFA*WK-------GGI*RLAWAVYRKPPGGESS 275
AKL+EI G++IFA K GG+ RKPPGGE+S
Sbjct: 236 AKLKEIGGNNIFADGKVEARDYLGGV--------RKPPGGETS 270
>ref|NP_177939.1| unknown protein; protein id: At1g78150.1 [Arabidopsis thaliana]
gi|25361078|pir||G96810 unknown protein T11I11.9
[imported] - Arabidopsis thaliana
gi|12324259|gb|AAG52106.1|AC012680_17 unknown protein;
39760-41105 [Arabidopsis thaliana]
Length = 283
Score = 58.2 bits (139), Expect(2) = 3e-11
Identities = 32/69 (46%), Positives = 43/69 (61%), Gaps = 8/69 (11%)
Frame = -2
Query: 569 TARVLELKGSIDIGELAPSQ--------ADGDGTTKTAKKIYKEKFADLSGNDIFRGEVP 414
T R L LK + ++G + S A+ D + KTAKKIY +KFA+LSGNDIF+G+
Sbjct: 175 TNRALALKDNFNLGAESQSNQRNAILQTAEEDSSVKTAKKIYDKKFAELSGNDIFKGDAA 234
Query: 413 PSSTEKSLS 387
S+ EK LS
Sbjct: 235 SSNVEKHLS 243
Score = 31.2 bits (69), Expect(2) = 3e-11
Identities = 20/43 (46%), Positives = 25/43 (57%), Gaps = 7/43 (16%)
Frame = -3
Query: 382 AKLREISGSHIFA*WK-------GGI*RLAWAVYRKPPGGESS 275
AKL+EI G++IFA K GG+ RKPPGGE+S
Sbjct: 245 AKLKEIGGNNIFADGKVEARDYLGGV--------RKPPGGETS 279
>ref|NP_564463.1| expressed protein; protein id: At1g35780.1, supported by cDNA:
gi_16226791, supported by cDNA: gi_17380891 [Arabidopsis
thaliana] gi|25361080|pir||A86480 F14D7.8 protein -
Arabidopsis thaliana gi|8778973|gb|AAF79888.1|AC021198_8
Contains strong similarity to an unknown protein
AAF18549 gi|6587863 from Arabidopsis thaliana BAC T11I11
gb|AC012680. ESTs gb|T21030, gb|Z18220, gb|T88048 and
gb|AI997737 come from this gene
gi|16226792|gb|AAL16263.1|AF428333_1 At1g35780/F14D7_9
[Arabidopsis thaliana] gi|17380892|gb|AAL36258.1|
unknown protein [Arabidopsis thaliana]
gi|21689673|gb|AAM67458.1| unknown protein [Arabidopsis
thaliana]
Length = 286
Score = 50.4 bits (119), Expect(2) = 1e-09
Identities = 29/62 (46%), Positives = 37/62 (58%), Gaps = 2/62 (3%)
Frame = -2
Query: 569 TARVLELKGSIDIGELAPSQADGDGTTKTAKKIYKEKFADLSGNDIFRGEV--PPSSTEK 396
T R L K + D+GE S DG KTAKKI KF DLSGN++F+ +V P S+T +
Sbjct: 186 TVRALAYKDNFDLGE---SDTKPDGELKTAKKIADRKFTDLSGNNVFKSDVSSPSSATAE 242
Query: 395 SL 390
L
Sbjct: 243 RL 244
Score = 33.5 bits (75), Expect(2) = 1e-09
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = -3
Query: 382 AKLREISGSHIFA*WKGGI*RLAWAVYRKPPGGESS 275
AKL+EISG+ IFA K R + RKPPGGESS
Sbjct: 248 AKLKEISGNDIFADAKAQS-RDYFGGVRKPPGGESS 282
>dbj|BAC10849.1| hypothetical protein~similar to Arabidopsis thaliana
chromosome1,At1g78150 [Oryza sativa (japonica
cultivar-group)]
Length = 287
Score = 51.2 bits (121), Expect(2) = 2e-09
Identities = 23/42 (54%), Positives = 30/42 (70%)
Frame = -2
Query: 512 QADGDGTTKTAKKIYKEKFADLSGNDIFRGEVPPSSTEKSLS 387
+AD D KTAKKI ++K DL+GNDIF+G+ P + EK LS
Sbjct: 206 EADTDSVVKTAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLS 247
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 22/43 (51%), Positives = 25/43 (57%), Gaps = 7/43 (16%)
Frame = -3
Query: 382 AKLREISGSHIFA*WK-------GGI*RLAWAVYRKPPGGESS 275
AKL+E++GS IFA K GGI RKPPGGESS
Sbjct: 249 AKLKEMTGSDIFADGKAPSRDYLGGI--------RKPPGGESS 283
>gb|AAL36221.1| unknown protein [Arabidopsis thaliana] gi|21436383|gb|AAM51361.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 45.4 bits (106), Expect = 5e-04
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Frame = -2
Query: 572 ITARVLELKGSIDIGELAP----------SQADGDGT--------TKTAKKIYKEKFADL 447
+ A E +G+ D+GE AP + A G KT+KKI+ +KF +L
Sbjct: 179 LVAAQQEARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEEPVVKTSKKIHNQKFQEL 238
Query: 446 SGNDIFRGEVPPSSTEKSLS 387
+GN IF+G+ P S +K LS
Sbjct: 239 TGNGIFKGDESPGSADKQLS 258
Score = 37.7 bits (86), Expect = 0.10
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = -3
Query: 454 QTFQEMTFSGV-KCHLPP--LRNR*AGAKLREISGSHIFA*WKGGI*RLAWAVYRKPPGG 284
Q FQE+T +G+ K P + + AKLRE+SG++IFA K R + RKPPGG
Sbjct: 233 QKFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSES-RDYFGGVRKPPGG 291
Query: 283 ESS 275
ESS
Sbjct: 292 ESS 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,206,005
Number of Sequences: 1393205
Number of extensions: 11419667
Number of successful extensions: 28533
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28522
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
