Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002854A_C01 KMC002854A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D84547 NAM (no apical meristem)-like protein [imported] - A... 37 0.26
ref|NP_565404.1| NAM (no apical meristem)-like protein; protein ... 37 0.26
ref|XP_226951.1| similar to hypothetical protein FLJ14007 [Homo ... 33 2.9
gb|ZP_00110453.1| hypothetical protein [Nostoc punctiforme] 33 4.9
ref|ZP_00117522.1| hypothetical protein [Cytophaga hutchinsonii] 32 6.4
>pir||D84547 NAM (no apical meristem)-like protein [imported] - Arabidopsis
thaliana
Length = 276
Score = 37.0 bits (84), Expect = 0.26
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 482 SSLQLPLGNDKLPELQLPMV-TDWTTQLTQDTFWAHLNSPWLQNLTP 345
SSL+LP G+ LPELQLP +W L+ SPWLQNLTP
Sbjct: 234 SSLKLPFGS--LPELQLPKPGVEWDQLLSI--------SPWLQNLTP 270
>ref|NP_565404.1| NAM (no apical meristem)-like protein; protein id: At2g17040.1,
supported by cDNA: gi_13605646, supported by cDNA:
gi_20857249 [Arabidopsis thaliana]
gi|13605647|gb|AAK32817.1|AF361804_1 At2g17040
[Arabidopsis thaliana] gi|20857250|gb|AAM26707.1|
At2g17040/At2g17040 [Arabidopsis thaliana]
Length = 250
Score = 37.0 bits (84), Expect = 0.26
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 482 SSLQLPLGNDKLPELQLPMV-TDWTTQLTQDTFWAHLNSPWLQNLTP 345
SSL+LP G+ LPELQLP +W L+ SPWLQNLTP
Sbjct: 208 SSLKLPFGS--LPELQLPKPGVEWDQLLSI--------SPWLQNLTP 244
>ref|XP_226951.1| similar to hypothetical protein FLJ14007 [Homo sapiens] [Rattus
norvegicus]
Length = 215
Score = 33.5 bits (75), Expect = 2.9
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Frame = -2
Query: 653 LCPFLCSKTLFLKKESEAEAENEEMMLSMSMSVPKPEKSQTQLVFNDSNQSTCGGGGSSL 474
+CP+ C K L+ +++ E E++ +PKP + TQ + D + GG S
Sbjct: 78 ICPY-CEKNFCLRHRHQSDHECEKL------EIPKPRMAATQKLVRDIVDAKAGGAASKG 130
Query: 473 QLPLGND----KLPELQLPMVTDWTTQLTQDTFWAHLNSPWLQNL 351
+ + K+ ++L M D L Q LN WL +L
Sbjct: 131 RKGAKSSRTAAKVALMKLKMHADGDKSLPQ------LNKEWLSDL 169
>gb|ZP_00110453.1| hypothetical protein [Nostoc punctiforme]
Length = 587
Score = 32.7 bits (73), Expect = 4.9
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -2
Query: 518 NDSNQSTCGGGGSSLQLPLGNDKLPELQLPMVTDWTTQLTQDTFWAHLNSPWLQNLT 348
N +N+ TC L LG D+LP L LP + DW Q +D + L LQNL+
Sbjct: 369 NVANKRTC-------PLVLGIDELPTLYLPALVDWLNQNREDGLISILG---LQNLS 415
>ref|ZP_00117522.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 482
Score = 32.3 bits (72), Expect = 6.4
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = -2
Query: 620 LKKESEAEAENEEMMLSMSMSVPKPEKSQTQLVFNDSNQSTCGGGGSSLQLPLGNDKLPE 441
LKKE+EA+ + +++ + KP + + + C + +PL D+ PE
Sbjct: 199 LKKENEADPQ-----MTIEWAASKPVQRRINGKVISLVKPDCMYDNTFFTIPLMTDQYPE 253
Query: 440 LQLPMVTDWTTQLTQD 393
L L WT LTQD
Sbjct: 254 LALYKEAVWTGYLTQD 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,531,425
Number of Sequences: 1393205
Number of extensions: 11715777
Number of successful extensions: 27468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27424
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
