Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002851A_C01 KMC002851A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566366.1| putative uridylate kinase; protein id: At3g1003... 51 1e-05
ref|NP_188498.1| uridylate kinase, putative; protein id: At3g186... 44 0.002
dbj|BAC05612.1| putative uridylate kinase [Oryza sativa (japonic... 43 0.003
ref|ZP_00072557.1| hypothetical protein [Trichodesmium erythraeu... 38 0.074
gb|ZP_00113561.1| hypothetical protein [Prochlorococcus marinus ... 38 0.074
>ref|NP_566366.1| putative uridylate kinase; protein id: At3g10030.1, supported by
cDNA: gi_14030680 [Arabidopsis thaliana]
gi|14030681|gb|AAK53015.1|AF375431_1 AT3g10030/T22K18_15
[Arabidopsis thaliana] gi|21464551|gb|AAM52230.1|
AT3g10030/T22K18_15 [Arabidopsis thaliana]
Length = 542
Score = 50.8 bits (120), Expect = 1e-05
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -2
Query: 336 MDFAAIYTCAVVVFNLLAPGNISKALCGEQVGTLIDQAG 220
++F + VVVFN L GNI+KALCGEQVGTLID++G
Sbjct: 500 LNFCEENSIPVVVFNFLEAGNITKALCGEQVGTLIDRSG 538
>ref|NP_188498.1| uridylate kinase, putative; protein id: At3g18680.1, supported by
cDNA: gi_15292788, supported by cDNA: gi_20258856
[Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1|
contains similarity to uridylate kinase~gene_id:MVE11.4
[Arabidopsis thaliana] gi|15292789|gb|AAK92763.1|
putative uridylate kinase [Arabidopsis thaliana]
gi|20258857|gb|AAM14100.1| putative uridylate kinase
[Arabidopsis thaliana]
Length = 339
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/41 (58%), Positives = 28/41 (67%), Gaps = 5/41 (12%)
Frame = -2
Query: 339 LMDFAAIYTCA-----VVVFNLLAPGNISKALCGEQVGTLI 232
+MD AI C VVVFNL PGNI+KA+ GE+VGTLI
Sbjct: 287 VMDMTAITLCQENNIPVVVFNLSEPGNIAKAIKGERVGTLI 327
>dbj|BAC05612.1| putative uridylate kinase [Oryza sativa (japonica cultivar-group)]
Length = 295
Score = 42.7 bits (99), Expect = 0.003
Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Frame = -2
Query: 339 LMDFAAIYTCA-----VVVFNLLAPGNISKALCGEQVGTLI 232
+MD AI C VVVFNL PGNI+KA+ GE+VGT I
Sbjct: 231 VMDMTAITLCQENNIPVVVFNLQKPGNIAKAIVGEKVGTFI 271
>ref|ZP_00072557.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 244
Score = 38.1 bits (87), Expect = 0.074
Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 5/59 (8%)
Frame = -2
Query: 393 ARDY*SHRGSRPLYLRSYLMDFAAIYTCA-----VVVFNLLAPGNISKALCGEQVGTLI 232
A+ Y S L L +MD AI C ++VFNL GNI KA+ GE++GT++
Sbjct: 177 AKRYESLSYGEVLTLDLRVMDSTAIALCKENNIPIIVFNLSVSGNICKAVMGEKIGTIV 235
>gb|ZP_00113561.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 237
Score = 38.1 bits (87), Expect = 0.074
Identities = 20/44 (45%), Positives = 26/44 (58%), Gaps = 5/44 (11%)
Frame = -2
Query: 339 LMDFAAIYTCA-----VVVFNLLAPGNISKALCGEQVGTLIDQA 223
+MD AI C +VVF+L PGNI KA+ GE +G+ I A
Sbjct: 193 VMDSTAIALCKDNNIPIVVFDLFEPGNIGKAVAGEAIGSRISNA 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,705,348
Number of Sequences: 1393205
Number of extensions: 10049992
Number of successful extensions: 18558
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 18046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18558
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
