Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002850A_C01 KMC002850A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175283.1| hypothetical protein; protein id: At1g48500.1 [... 68 6e-11
ref|NP_566590.1| expressed protein; protein id: At3g17860.1, sup... 53 2e-06
gb|AAM67301.1| unknown [Arabidopsis thaliana] 53 2e-06
pir||D96731 hypothetical protein F5A18.12 [imported] - Arabidops... 52 4e-06
pir||H96524 protein T1N15.11 [imported] - Arabidopsis thaliana g... 49 4e-05
>ref|NP_175283.1| hypothetical protein; protein id: At1g48500.1 [Arabidopsis
thaliana]
Length = 285
Score = 68.2 bits (165), Expect = 6e-11
Identities = 40/81 (49%), Positives = 52/81 (63%), Gaps = 2/81 (2%)
Frame = -3
Query: 516 SSGNNELPMIRPAGP--STAPNNHSRSAATKMIQPGGLPQARKASLARFLEKRKERVIST 343
SSG+N + + P S A ++++AA M GLPQ RKASLARFLEKRKERVI+
Sbjct: 196 SSGSNGVTGLGPTKTKASLASTRNNQTAAFSMAPTVGLPQTRKASLARFLEKRKERVINV 255
Query: 342 LPYFKCNKTSPECSTPGSDSV 280
PY+ NK+S +C T S+ V
Sbjct: 256 SPYYVDNKSSIDCRTLMSECV 276
>ref|NP_566590.1| expressed protein; protein id: At3g17860.1, supported by cDNA:
12707., supported by cDNA: gi_13926314 [Arabidopsis
thaliana] gi|9294490|dbj|BAB02709.1|
gb|AAF09073.1~gene_id:MEB5.8~similar to unknown protein
[Arabidopsis thaliana]
gi|13926315|gb|AAK49623.1|AF372907_1 AT3g17860/MEB5_8
[Arabidopsis thaliana] gi|27764976|gb|AAO23609.1|
At3g17860/MEB5_8 [Arabidopsis thaliana]
Length = 352
Score = 53.1 bits (126), Expect = 2e-06
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = -3
Query: 444 SAATKMIQPG-GLPQARKASLARFLEKRKERVISTLPYFKCNKTSPECSTPGSDSVGFSM 268
S +T ++ P LP ARKASLARFLEKRKERV S PY K+S +C S+ + S+
Sbjct: 289 SCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTDCRRSMSECISSSL 348
>gb|AAM67301.1| unknown [Arabidopsis thaliana]
Length = 352
Score = 53.1 bits (126), Expect = 2e-06
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = -3
Query: 444 SAATKMIQPG-GLPQARKASLARFLEKRKERVISTLPYFKCNKTSPECSTPGSDSVGFSM 268
S +T ++ P LP ARKASLARFLEKRKERV S PY K+S +C S+ + S+
Sbjct: 289 SCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPYCLDKKSSTDCRRSMSECISSSL 348
>pir||D96731 hypothetical protein F5A18.12 [imported] - Arabidopsis thaliana
gi|12324750|gb|AAG52332.1|AC011663_11 hypothetical
protein; 49277-47786 [Arabidopsis thaliana]
Length = 217
Score = 52.0 bits (123), Expect = 4e-06
Identities = 30/60 (50%), Positives = 39/60 (65%)
Frame = -3
Query: 450 SRSAATKMIQPGGLPQARKASLARFLEKRKERVISTLPYFKCNKTSPECSTPGSDSVGFS 271
S +AA + + P PQARKASLARFLEKRKER++S +PY K + ST S + +S
Sbjct: 156 SFNAAPRNMIPSVFPQARKASLARFLEKRKERLMSAMPY---KKMLLDLSTGESSGMNYS 212
>pir||H96524 protein T1N15.11 [imported] - Arabidopsis thaliana
gi|8778689|gb|AAF79697.1|AC020889_5 T1N15.11
[Arabidopsis thaliana]
Length = 256
Score = 48.9 bits (115), Expect = 4e-05
Identities = 29/56 (51%), Positives = 36/56 (63%), Gaps = 2/56 (3%)
Frame = -3
Query: 516 SSGNNELPMIRPAGP--STAPNNHSRSAATKMIQPGGLPQARKASLARFLEKRKER 355
SSG+N + + P S A ++++AA M GLPQ RKASLARFLEKRKER
Sbjct: 200 SSGSNGVTGLGPTKTKASLASTRNNQTAAFSMAPTVGLPQTRKASLARFLEKRKER 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,887,701
Number of Sequences: 1393205
Number of extensions: 9169716
Number of successful extensions: 21535
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 20728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21503
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
