Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002849A_C02 KMC002849A_c02
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181634.1| unknown protein; protein id: At2g41010.1, suppo... 55 7e-07
ref|NP_191247.1| putative protein; protein id: At3g56880.1, supp... 48 1e-04
ref|NP_610972.2| CG12864-PA [Drosophila melanogaster] gi|7303166... 40 0.029
ref|NP_788354.1| CG12864-PB [Drosophila melanogaster] gi|2838083... 40 0.029
gb|AAA87047.1| pistil extensin-like protein 28 0.33
>ref|NP_181634.1| unknown protein; protein id: At2g41010.1, supported by cDNA:
gi_13272432 [Arabidopsis thaliana]
gi|7487625|pir||T02118 hypothetical protein At2g41010
[imported] - Arabidopsis thaliana
gi|3402716|gb|AAD12010.1| unknown protein [Arabidopsis
thaliana] gi|13272433|gb|AAK17155.1|AF325087_1 unknown
protein [Arabidopsis thaliana]
gi|26449325|dbj|BAC41790.1| unknown protein [Arabidopsis
thaliana]
Length = 238
Score = 55.1 bits (131), Expect = 7e-07
Identities = 28/67 (41%), Positives = 40/67 (58%)
Frame = -2
Query: 558 LPTLDTSAFLLDHHHQNNAAVGPDSAGDGPGLSGPGPVSFGQLMDDAASFDFESFSSFPT 379
+P LDTSAFL +HHQ N AVG +G+ + P ++ +F+++ +FPT
Sbjct: 173 VPMLDTSAFL-SNHHQENLAVGNAFSGNSSSVGLPSGKPSATADPGGSAVEFDNYPTFPT 231
Query: 378 LESWKVM 358
LESWKVM
Sbjct: 232 LESWKVM 238
>ref|NP_191247.1| putative protein; protein id: At3g56880.1, supported by cDNA:
39584., supported by cDNA: gi_15028354 [Arabidopsis
thaliana] gi|11289614|pir||T51276 hypothetical protein
T8M16_210 - Arabidopsis thaliana
gi|9663007|emb|CAC00751.1| putative protein [Arabidopsis
thaliana] gi|15028355|gb|AAK76654.1| unknown protein
[Arabidopsis thaliana] gi|24030447|gb|AAN41377.1|
unknown protein [Arabidopsis thaliana]
Length = 245
Score = 47.8 bits (112), Expect = 1e-04
Identities = 26/67 (38%), Positives = 38/67 (55%)
Frame = -2
Query: 558 LPTLDTSAFLLDHHHQNNAAVGPDSAGDGPGLSGPGPVSFGQLMDDAASFDFESFSSFPT 379
+PTLDTS+FL +HH +N G S G + + +++ + +S+ SFPT
Sbjct: 180 VPTLDTSSFLSNHHQENIITDLGAPTGSFHHQSSAGTTT-ANVGGGSSAVELDSYPSFPT 238
Query: 378 LESWKVM 358
LESWKVM
Sbjct: 239 LESWKVM 245
>ref|NP_610972.2| CG12864-PA [Drosophila melanogaster] gi|7303166|gb|AAF58230.1|
CG12864-PA [Drosophila melanogaster]
Length = 3257
Score = 39.7 bits (91), Expect = 0.029
Identities = 27/70 (38%), Positives = 29/70 (40%), Gaps = 5/70 (7%)
Frame = +2
Query: 317 QFLIIDLNFSSSHHMTFHDSRVGKLEKLSKSNEAASSMSCPKETGP-----GPESPGPSP 481
QFL+I F S KLE L KS E SS P T P GP S P+P
Sbjct: 2764 QFLVITTKFISKADKNMPSKVRAKLELLDKSKERDSSKLTPTATTPTADPTGPSSFSPAP 2823
Query: 482 AESGPTAALF 511
A GP F
Sbjct: 2824 ASVGPATQPF 2833
>ref|NP_788354.1| CG12864-PB [Drosophila melanogaster] gi|28380831|gb|AAO41391.1|
CG12864-PB [Drosophila melanogaster]
Length = 1633
Score = 39.7 bits (91), Expect = 0.029
Identities = 27/70 (38%), Positives = 29/70 (40%), Gaps = 5/70 (7%)
Frame = +2
Query: 317 QFLIIDLNFSSSHHMTFHDSRVGKLEKLSKSNEAASSMSCPKETGP-----GPESPGPSP 481
QFL+I F S KLE L KS E SS P T P GP S P+P
Sbjct: 1140 QFLVITTKFISKADKNMPSKVRAKLELLDKSKERDSSKLTPTATTPTADPTGPSSFSPAP 1199
Query: 482 AESGPTAALF 511
A GP F
Sbjct: 1200 ASVGPATQPF 1209
>gb|AAA87047.1| pistil extensin-like protein
Length = 430
Score = 28.5 bits (62), Expect(2) = 0.33
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 419 ASSMSCPKETGPGPESPGPSPAESGPT 499
A S S K++ P P +P PSPA PT
Sbjct: 195 APSPSPAKQSPPPPRAPSPSPATQPPT 221
Score = 26.6 bits (57), Expect(2) = 0.33
Identities = 15/36 (41%), Positives = 17/36 (46%), Gaps = 3/36 (8%)
Frame = +3
Query: 483 PSRDPP---PRCSGDDGPVRTPRCPASAADTPLPPL 581
P+ +PP P S P PR PA PLPPL
Sbjct: 254 PAAEPPIVAPFPSPTANPPHVPRRPAPPVVKPLPPL 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,051,961
Number of Sequences: 1393205
Number of extensions: 14467875
Number of successful extensions: 61038
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 50496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60315
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
