Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002843A_C01 KMC002843A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06354 lipoxygenase (EC 1.13.11.12) - soybean gi|439857|gb|... 308 4e-83
pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|123694... 308 4e-83
gb|AAF15296.2|AF204210_1 lipoxygenase [Phaseolus vulgaris] 308 7e-83
sp|P38417|LOX4_SOYBN Lipoxygenase-4 (L-4) (VSP94) gi|7433159|pir... 307 9e-83
pir||T06596 lipoxygenase (EC 1.13.11.12) 7 - soybean gi|1173642|... 301 5e-81
>pir||T06354 lipoxygenase (EC 1.13.11.12) - soybean gi|439857|gb|AAA03726.1|
lipoxygenase
Length = 839
Score = 308 bits (790), Expect = 4e-83
Identities = 146/189 (77%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Frame = -1
Query: 738 ELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTL 559
ELVQVGHGDLK KPWW KMQ R EL+EAS+ LIWI+SALHAAVNFGQYPYGG ILNRPT+
Sbjct: 651 ELVQVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTI 710
Query: 558 SRRYMPSKDA-EFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGG 382
SRR+MP K + E+D L+KNP+K +L+TIT K ETL DLT+IE+LSRHASDE YLG+RDGG
Sbjct: 711 SRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGG 770
Query: 381 DLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTF 202
D WT+D L+AFK+FG KL EIEKKLI++N DE+LRNRYGP KMPYTLLYPSSEEGLTF
Sbjct: 771 DYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTF 830
Query: 201 RGIPNSISI 175
RGIPNSISI
Sbjct: 831 RGIPNSISI 839
>pir||T07036 lipoxygenase (EC 1.13.11.12) L-5 - soybean gi|1236949|gb|AAB67732.1|
lipoxygenase L-5 [Glycine max]
Length = 853
Score = 308 bits (790), Expect = 4e-83
Identities = 146/189 (77%), Positives = 167/189 (88%), Gaps = 1/189 (0%)
Frame = -1
Query: 738 ELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTL 559
ELV+VGHGDLK KPWW KMQ R EL+EAS+TLIWI+SALHAAVNFGQYPYGG ILNRPT+
Sbjct: 665 ELVEVGHGDLKDKPWWQKMQTREELVEASATLIWIASALHAAVNFGQYPYGGLILNRPTI 724
Query: 558 SRRYMPSKDA-EFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGG 382
SRR+MP K + E+D L+KNP+K +L+TIT K ETL DLTIIE+LSRHASDE YLG+RDGG
Sbjct: 725 SRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTIIEILSRHASDEFYLGQRDGG 784
Query: 381 DLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTF 202
D WT+D L+AFK+FG L EIEKKLI++N+DE+LRNRYGP KMPYTLLYPSSEEGLTF
Sbjct: 785 DYWTSDAGPLEAFKRFGKNLEEIEKKLIEKNNDETLRNRYGPAKMPYTLLYPSSEEGLTF 844
Query: 201 RGIPNSISI 175
RGIPNSISI
Sbjct: 845 RGIPNSISI 853
>gb|AAF15296.2|AF204210_1 lipoxygenase [Phaseolus vulgaris]
Length = 856
Score = 308 bits (788), Expect = 7e-83
Identities = 146/189 (77%), Positives = 168/189 (88%), Gaps = 1/189 (0%)
Frame = -1
Query: 738 ELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTL 559
ELVQVGHGDLK KPWWPKMQ+R L+E S+TLIWI+SALHAAVNFGQYPYGG ILNRPT+
Sbjct: 668 ELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTI 727
Query: 558 SRRYMPSK-DAEFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGG 382
SRR+MP K AE+ L+KNP+K +L+TIT K ETL DLT+IE+LSR+ASDE+YLGERDGG
Sbjct: 728 SRRFMPEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRYASDEIYLGERDGG 787
Query: 381 DLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTF 202
D WT+D L+AFK+FG KLAEIEKKL+Q+N+DE+LRNR GP KMPYTLLYPSSEEGLTF
Sbjct: 788 DHWTSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEEGLTF 847
Query: 201 RGIPNSISI 175
RGIPNSISI
Sbjct: 848 RGIPNSISI 856
>sp|P38417|LOX4_SOYBN Lipoxygenase-4 (L-4) (VSP94) gi|7433159|pir||T07662 lipoxygenase (EC
1.13.11.12) L-4 - soybean gi|2160320|dbj|BAA03101.1|
lipxygenase L-4 [Glycine max]
Length = 853
Score = 307 bits (787), Expect = 9e-83
Identities = 145/189 (76%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Frame = -1
Query: 738 ELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTL 559
ELV+VGHGDLK KPWW KMQ R EL+EAS+ LIWI+SALHAAVNFGQYPYGG ILNRPT+
Sbjct: 665 ELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTI 724
Query: 558 SRRYMPSKDA-EFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGG 382
SRR+MP K + E+D L+KNP+K +L+TIT K ETL DLT+IE+LSRHASDE YLG+RDGG
Sbjct: 725 SRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGG 784
Query: 381 DLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTF 202
D WT+D L+AFK+FG KL EIEKKLI++N DE+LRNRYGP KMPYTLLYPSSEEGLTF
Sbjct: 785 DYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTF 844
Query: 201 RGIPNSISI 175
RGIPNSISI
Sbjct: 845 RGIPNSISI 853
>pir||T06596 lipoxygenase (EC 1.13.11.12) 7 - soybean gi|1173642|gb|AAC49159.1|
lipoxygenase gi|1588566|prf||2208476A lipoxygenase
Length = 856
Score = 301 bits (772), Expect = 5e-81
Identities = 147/189 (77%), Positives = 162/189 (84%), Gaps = 1/189 (0%)
Frame = -1
Query: 738 ELVQVGHGDLKSKPWWPKMQNRAELIEASSTLIWISSALHAAVNFGQYPYGGYILNRPTL 559
ELVQVGHGDLK KPWW KMQ ELIEAS+TLIWI+SALHAAVNFGQYPYGG ILNRPT+
Sbjct: 668 ELVQVGHGDLKDKPWWQKMQTCEELIEASATLIWIASALHAAVNFGQYPYGGLILNRPTI 727
Query: 558 SRRYMPSK-DAEFDELSKNPQKAYLRTITAKSETLTDLTIIEVLSRHASDELYLGERDGG 382
SRR+MP K AE+ L+KNP+K +L+TIT + ETL DLTIIE+LSRHASDE YLGERDGG
Sbjct: 728 SRRFMPEKGSAEYAALAKNPEKEFLKTITGEKETLIDLTIIEILSRHASDEFYLGERDGG 787
Query: 381 DLWTTDTQALQAFKKFGTKLAEIEKKLIQRNSDESLRNRYGPVKMPYTLLYPSSEEGLTF 202
D WT+D L+AFK+FG KL EIE KLIQ N DE+LRNR GP KMPYTLLYPSSEEGLTF
Sbjct: 788 DFWTSDAGPLEAFKRFGKKLQEIEHKLIQENKDETLRNRTGPAKMPYTLLYPSSEEGLTF 847
Query: 201 RGIPNSISI 175
RGIPNSISI
Sbjct: 848 RGIPNSISI 856
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,561,342
Number of Sequences: 1393205
Number of extensions: 13903994
Number of successful extensions: 37359
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 35579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37081
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
