KMC002842A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC002842A_C01 KMC002842A_c01
ATCACTAAAAAAATAATTCAGGGAATGAGTCTGTCCTACAAAACTCGAAGCATTAATTTA
TGCTGATGTAACTATGAACAAATGTGGAACTCCACAAAAGATAATACCACCCAGGGATTA
TTCATGTTCAAGGAAATACAGTCAAGGAAACGATTACATTCCAAGAGGCGCATTACATAG
GTTAGTCAAATATGACTTGGGATCACCAAGATCCACCGCCAGTCCATCCATCCTCACCTG
CTTTCTTGGTGCCTGTTCCCCAGCCAGAGCTTCCCTCTTGAGCATCGTTTTGATCACCAC
CACTCCCTTGTCCCCAGCCACCATTGTCGCCGGTACTAGCTCCACCTCCCCAACCACTGC
CTCCATCACTTCCACCCCAACCACCAGGAAATGCTTCCCTTCCAGGGGAATTTTGAACCT
TCGCCCCTGGGAAATTGCTTAAACCATCATTCCCATCTTTCGATGCAGGACCCCATCTGC
CAGCACCATAACCAGAGTCCTGCCTTTCATTATTGGAGTTGTGTCCTCTACTACTGCTGT
AAGAACCTCGACCACGTCCACGACCACCATATGGACGAGGCACTCCACTA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002842A_C01 KMC002842A_c01
         (590 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_176723.1| unknown protein; protein id: At1g65440.1 [Arabi...    85  8e-16
pir||T02367 hypothetical protein T8F5.22 - Arabidopsis thaliana ...    85  8e-16
ref|NP_501522.1| Putative secreted or extracellular protein prec...    76  4e-13
gb|AAL02515.2|AF038613_8 Human hnrnp a1 homolog protein 1, isofo...    72  4e-12
gb|AAH45260.1| similar to heterogeneous ribonuclear particle pro...    72  7e-12

>ref|NP_176723.1| unknown protein; protein id: At1g65440.1 [Arabidopsis thaliana]
          Length = 1703

 Score = 84.7 bits (208), Expect = 8e-16
 Identities = 59/149 (39%), Positives = 72/149 (47%), Gaps = 22/149 (14%)
 Frame = -2

Query: 589  SGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWG---PASKDGNDGLSNFPGAK 419
            SG PRPYGGRGRGRG     R  + N++RQD   G G WG     + DG  G S   G  
Sbjct: 1535 SGAPRPYGGRGRGRGR---GRRDDMNSDRQD---GNGDWGNNDTGTADGGWGNSG-GGGW 1587

Query: 418  VQNSPGREA---FPGGWGG------SDGGSGWGGGASTGDNGGWGQGSGGDQND------ 284
               S G++      GGWG       SDG   WG G+  G +GGWG  SGG ++       
Sbjct: 1588 GSESAGKKTGGGSTGGWGSESGGNKSDGAGSWGSGSGGGGSGGWGNDSGGKKSSEDGGFG 1647

Query: 283  --AQEGSSGWG--TGTKKAGEDGWTGGGS 209
              +  G S WG  +G KK+  DG  G  S
Sbjct: 1648 SGSGGGGSDWGNESGGKKSSADGGWGSES 1676

 Score = 68.6 bits (166), Expect = 6e-11
 Identities = 54/138 (39%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
 Frame = -2

Query: 565  GRGRGRGSYSSSRG---HNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGRE 395
            G GRG G Y +  G   H S   R   G G GR      D N    +  G    N  G  
Sbjct: 1517 GSGRG-GEYRNGGGRDGHPSGAPRPYGGRGRGRGRGRRDDMNSDRQDGNGDWGNNDTG-- 1573

Query: 394  AFPGGWGGSDGGSGWG---GGAST--GDNGGWGQGSGGDQNDAQ---------EGSSGWG 257
               GGWG S GG GWG    G  T  G  GGWG  SGG+++D            GS GWG
Sbjct: 1574 TADGGWGNS-GGGGWGSESAGKKTGGGSTGGWGSESGGNKSDGAGSWGSGSGGGGSGGWG 1632

Query: 256  --TGTKKAGEDGWTGGGS 209
              +G KK+ EDG  G GS
Sbjct: 1633 NDSGGKKSSEDGGFGSGS 1650

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = -2

Query: 496  SGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWGGGASTGDNGG 317
            SG+G+ +     K  +D   +  G + +N  GR+  P G     GG G G G        
Sbjct: 1498 SGWGSSQSEGGWKGNSDRSGSGRGGEYRNGGGRDGHPSGAPRPYGGRGRGRG-------- 1549

Query: 316  WGQGSGGDQN-DAQEGSSGWGTGTKKAGEDGW--TGGGSW*SQ 197
              +G   D N D Q+G+  WG       + GW  +GGG W S+
Sbjct: 1550 --RGRRDDMNSDRQDGNGDWGNNDTGTADGGWGNSGGGGWGSE 1590

>pir||T02367 hypothetical protein T8F5.22 - Arabidopsis thaliana
            gi|3335349|gb|AAC27151.1|AAC27151 Similar to gb|U46691
            putative chromatin structure regulator (SUPT6H) from Homo
            sapiens.  ESTs gb|T42908, gb|AA586170 and gb|AA395125
            come from this gene. [Arabidopsis thaliana]
          Length = 1684

 Score = 84.7 bits (208), Expect = 8e-16
 Identities = 59/149 (39%), Positives = 72/149 (47%), Gaps = 22/149 (14%)
 Frame = -2

Query: 589  SGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWG---PASKDGNDGLSNFPGAK 419
            SG PRPYGGRGRGRG     R  + N++RQD   G G WG     + DG  G S   G  
Sbjct: 1516 SGAPRPYGGRGRGRGR---GRRDDMNSDRQD---GNGDWGNNDTGTADGGWGNSG-GGGW 1568

Query: 418  VQNSPGREA---FPGGWGG------SDGGSGWGGGASTGDNGGWGQGSGGDQND------ 284
               S G++      GGWG       SDG   WG G+  G +GGWG  SGG ++       
Sbjct: 1569 GSESAGKKTGGGSTGGWGSESGGNKSDGAGSWGSGSGGGGSGGWGNDSGGKKSSEDGGFG 1628

Query: 283  --AQEGSSGWG--TGTKKAGEDGWTGGGS 209
              +  G S WG  +G KK+  DG  G  S
Sbjct: 1629 SGSGGGGSDWGNESGGKKSSADGGWGSES 1657

 Score = 68.6 bits (166), Expect = 6e-11
 Identities = 54/138 (39%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
 Frame = -2

Query: 565  GRGRGRGSYSSSRG---HNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGRE 395
            G GRG G Y +  G   H S   R   G G GR      D N    +  G    N  G  
Sbjct: 1498 GSGRG-GEYRNGGGRDGHPSGAPRPYGGRGRGRGRGRRDDMNSDRQDGNGDWGNNDTG-- 1554

Query: 394  AFPGGWGGSDGGSGWG---GGAST--GDNGGWGQGSGGDQNDAQ---------EGSSGWG 257
               GGWG S GG GWG    G  T  G  GGWG  SGG+++D            GS GWG
Sbjct: 1555 TADGGWGNS-GGGGWGSESAGKKTGGGSTGGWGSESGGNKSDGAGSWGSGSGGGGSGGWG 1613

Query: 256  --TGTKKAGEDGWTGGGS 209
              +G KK+ EDG  G GS
Sbjct: 1614 NDSGGKKSSEDGGFGSGS 1631

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
 Frame = -2

Query: 496  SGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWGGGASTGDNGG 317
            SG+G+ +     K  +D   +  G + +N  GR+  P G     GG G G G        
Sbjct: 1479 SGWGSSQSEGGWKGNSDRSGSGRGGEYRNGGGRDGHPSGAPRPYGGRGRGRG-------- 1530

Query: 316  WGQGSGGDQN-DAQEGSSGWGTGTKKAGEDGW--TGGGSW*SQ 197
              +G   D N D Q+G+  WG       + GW  +GGG W S+
Sbjct: 1531 --RGRRDDMNSDRQDGNGDWGNNDTGTADGGWGNSGGGGWGSE 1571

>ref|NP_501522.1| Putative secreted or extracellular protein precursor
           [Caenorhabditis elegans] gi|7508657|pir||T25404
           hypothetical protein T28C6.1 - Caenorhabditis elegans
           gi|3880303|emb|CAA90992.1| Hypothetical protein T28C6.1
           [Caenorhabditis elegans]
          Length = 274

 Score = 75.9 bits (185), Expect = 4e-13
 Identities = 46/118 (38%), Positives = 54/118 (44%)
 Frame = -2

Query: 568 GGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAF 389
           G  G   GS   S G    + R DSG G G WG   + GN     + G++   + G    
Sbjct: 116 GWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWG-GQQGGNSNAGGWGGSQGGQNGG---- 170

Query: 388 PGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTGG 215
            GG GGS G  GWGG    G  GGWG  +GG Q   Q G  G G G  + GE G  GG
Sbjct: 171 -GGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGG--GGGRGGNQGGEQGGWGG 225

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 53/148 (35%), Positives = 63/148 (41%), Gaps = 29/148 (19%)
 Frame = -2

Query: 568 GGRGRGRGSYSSSRGHNSNNER--------------------QDSGYGAGRWGPASKDGN 449
           GGRG GRG     RG  S   R                    QD G  AG WG +     
Sbjct: 66  GGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQ 125

Query: 448 DGLSNFPGAKVQNSPGREAFPGGWGGSDGGS----GWGGGASTGDNGGWGQGSGGDQ--- 290
            G S   G   ++  G  +  GGWGG  GG+    GW GG+  G NGG G+G  G Q   
Sbjct: 126 GGSSGGWGGSSRSDSG--SGQGGWGGQQGGNSNAGGW-GGSQGGQNGGGGRGGSGGQGGW 182

Query: 289 NDAQEGSS--GWGTGTKKAGEDGWTGGG 212
             +Q+G S  GWG G    G+ G  GGG
Sbjct: 183 GGSQDGGSQGGWG-GQNGGGQGGNQGGG 209

 Score = 64.7 bits (156), Expect = 8e-10
 Identities = 43/124 (34%), Positives = 51/124 (40%), Gaps = 10/124 (8%)
 Frame = -2

Query: 568 GGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAF 389
           GG     G   S  G N    R  SG G G WG +   G+ G   + G       G +  
Sbjct: 152 GGNSNAGGWGGSQGGQNGGGGRGGSG-GQGGWGGSQDGGSQG--GWGGQNGGGQGGNQGG 208

Query: 388 PGGWGGSDGG--SGWG------GGASTGDNGGWGQ--GSGGDQNDAQEGSSGWGTGTKKA 239
            GG GG+ GG   GWG      GG+  G  GGWG   G  G     Q+G  GWG G +  
Sbjct: 209 GGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGG 268

Query: 238 GEDG 227
           G  G
Sbjct: 269 GWGG 272

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 40/97 (41%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = -2

Query: 481 GRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWG----GGASTGDNGGW 314
           GR G  S D  DGL  F G+   +  G     GGWGGSD  +G      GG   G  GG 
Sbjct: 22  GRQG-ISGDSGDGL--FGGSDAGSGIGSS---GGWGGSDASAGASAGGTGGGRGGGRGGS 75

Query: 313 GQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTG--GGS 209
           G G GG     + GS G G G   +G  GW G  GGS
Sbjct: 76  GGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGS 112

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 36/98 (36%), Positives = 41/98 (41%)
 Frame = -2

Query: 499 DSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWGGGASTGDNG 320
           D+G G G     S  G  G     GA    + G     GG GGS GG G G G   G +G
Sbjct: 39  DAGSGIG-----SSGGWGGSDASAGASAGGTGGGRG--GGRGGSGGGRGGGSGGGRGGSG 91

Query: 319 GWGQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTGGGSW 206
           G G G  G       GS GWG      G+DG +  G W
Sbjct: 92  GAGAGGSG------SGSGGWG------GQDGGSSAGGW 117

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 40/111 (36%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
 Frame = -2

Query: 496 SGYGA-GRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGG-WGGSDGGSGWGGGASTG-- 329
           SG G+ G WG +            G +     GR    GG  GGS GG G  GGA  G  
Sbjct: 42  SGIGSSGGWGGSDASAGASAGGTGGGR---GGGRGGSGGGRGGGSGGGRGGSGGAGAGGS 98

Query: 328 --DNGGWG--------QGSGGDQNDAQEGSS-GWGTGTKK---AGEDGWTG 218
              +GGWG         G GG Q  +Q GSS GWG  ++    +G+ GW G
Sbjct: 99  GSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGG 149

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 36/104 (34%), Positives = 41/104 (38%), Gaps = 11/104 (10%)
 Frame = -2

Query: 589 SGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQN 410
           SG    +GG   G GS     G N   +  + G G GR G  ++ G  G     G     
Sbjct: 176 SGGQGGWGGSQDG-GSQGGWGGQNGGGQGGNQGGGGGRGG--NQGGEQGGWGGQGGSQGG 232

Query: 409 SPGREAFPGGWG---GSDGG--------SGWGGGASTGDNGGWG 311
           S G     GGWG   G  GG         GWGGG   G  GGWG
Sbjct: 233 SQGGSQ--GGWGNQGGQQGGGRGGQQGPGGWGGG---GRGGGWG 271

>gb|AAL02515.2|AF038613_8 Human hnrnp a1 homolog protein 1, isoform b [Caenorhabditis
           elegans]
          Length = 309

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 45/127 (35%), Positives = 51/127 (39%), Gaps = 8/127 (6%)
 Frame = -2

Query: 568 GGRGRG--RGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGRE 395
           GGR R   RG Y+   G            G G WG  ++ G  G    PG   Q   G  
Sbjct: 170 GGRSRDGQRGGYNGGGG------------GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGG 217

Query: 394 AFPGGWG--GSDGGSGWGGGASTGDNGGWGQGSGGDQ----NDAQEGSSGWGTGTKKAGE 233
            + GGWG  G  G  GWGG       GGWGQ  GG Q       Q+   GWG   +  G 
Sbjct: 218 NYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWGGPQQGGGG 277

Query: 232 DGWTGGG 212
            GW G G
Sbjct: 278 GGWGGQG 284

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 39/105 (37%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = -2

Query: 586 GVPRPYGGRGRG-RGSYSSSRGHNSNNERQDSGYGAGRWG-PASKDGNDGLSNFPGAKVQ 413
           G P  YGG G G +G Y    G+      Q  G G G WG P  + G  G     G    
Sbjct: 198 GGPGAYGGPGGGGQGGYGG--GNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQG 255

Query: 412 NSPG-REAFPGGWGGSD---GGSGWGGGASTGDNGGWGQGSGGDQ 290
              G ++   GGWGG     GG GWGG       GGWG  SG  Q
Sbjct: 256 GWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ--QQGGWGGQSGAQQ 298

 Score = 51.2 bits (121), Expect = 1e-05
 Identities = 38/119 (31%), Positives = 47/119 (38%), Gaps = 8/119 (6%)
 Frame = -2

Query: 529 RGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGW-GGSDGGSG 353
           + H  N  R D   G       SKD           + +    R+   GG+ GG  GG G
Sbjct: 137 KSHMVNGHRCDVRKGL------SKDEMSKAQMNRDRETRGGRSRDGQRGGYNGGGGGGGG 190

Query: 352 WGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGTK-KAGEDGW------TGGGSW*SQ 197
           WGG A  G  G +G   GG Q     G+ G G G +   G+ GW       GGG W  Q
Sbjct: 191 WGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQ 249

>gb|AAH45260.1| similar to heterogeneous ribonuclear particle protein [Xenopus
           laevis]
          Length = 399

 Score = 71.6 bits (174), Expect = 7e-12
 Identities = 46/126 (36%), Positives = 53/126 (41%), Gaps = 5/126 (3%)
 Frame = -2

Query: 571 YGGRGRG----RGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQN-S 407
           +GGRG      RG    +R +  +    D G+G     P    GN G     G      S
Sbjct: 213 FGGRGGNFGGNRGGGFGNRSYGGDGFGNDGGFGGS---PPYSGGNRGYGGSQGGGYGGGS 269

Query: 406 PGREAFPGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGTKKAGEDG 227
            G     GG GG  GG G GGG   G  GG+G G GG     Q G  G G G    G DG
Sbjct: 270 QGGGYGGGGQGGGYGGGGQGGGYGGGQTGGYGGGQGGGYGGGQGGGYGGGQGGGNGGYDG 329

Query: 226 WTGGGS 209
           + GGGS
Sbjct: 330 YNGGGS 335

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 41/121 (33%), Positives = 47/121 (37%), Gaps = 1/121 (0%)
 Frame = -2

Query: 574 PYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGRE 395
           PY G  RG   Y  S+G       Q  GYG G  G     G  G                
Sbjct: 249 PYSGGNRG---YGGSQGGGYGGGSQGGGYGGGGQGGGYGGGGQG---------------- 289

Query: 394 AFPGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGW-GTGTKKAGEDGWTG 218
              GG+GG   G G+GGG   G  GG G G GG Q     G  G+ G G+   G  G +G
Sbjct: 290 ---GGYGGGQTG-GYGGGQGGGYGGGQGGGYGGGQGGGNGGYDGYNGGGSGSGGNFGGSG 345

Query: 217 G 215
           G
Sbjct: 346 G 346

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 46/139 (33%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
 Frame = -2

Query: 589 SGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQN 410
           SG  R YGG  +G G    S+G       Q  GYG G  G     G  G   + G +   
Sbjct: 251 SGGNRGYGG-SQGGGYGGGSQGGGYGGGGQGGGYGGGGQGGGYGGGQTG--GYGGGQGGG 307

Query: 409 SPGREA--FPGGWGGSDGG-SGW-GGGASTGDN--GGWGQGSGGDQNDAQEGSSG----- 263
             G +   + GG GG +GG  G+ GGG+ +G N  G  G    G+ N+    S G     
Sbjct: 308 YGGGQGGGYGGGQGGGNGGYDGYNGGGSGSGGNFGGSGGYNDFGNYNNQSSSSFGPMKGG 367

Query: 262 -WGTGTKKAGEDGWTGGGS 209
            +G G   A   G  GGGS
Sbjct: 368 NYGGGRNSAPYAGGYGGGS 386

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 43/120 (35%), Positives = 51/120 (41%)
 Frame = -2

Query: 571 YGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREA 392
           YGGRG         RG N    R   G+G   +G     GNDG   F G+   +   R  
Sbjct: 202 YGGRGGFGNDNFGGRGGNFGGNR-GGGFGNRSYG-GDGFGNDG--GFGGSPPYSGGNR-- 255

Query: 391 FPGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTGGG 212
              G+GGS GG G+GGG+  G     G G GG       G  G G G    G+ G  GGG
Sbjct: 256 ---GYGGSQGG-GYGGGSQGG-----GYGGGGQGGGYGGGGQGGGYG---GGQTGGYGGG 303

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 33/101 (32%), Positives = 42/101 (40%), Gaps = 9/101 (8%)
 Frame = -2

Query: 487 GAGRWGPASKDGNDGLS----NFPGAKVQNSPGREAFPGGWGGSDGGSGWGG-----GAS 335
           G+G +G     GND       NF G +     G  ++ G   G+DG  G+GG     G +
Sbjct: 198 GSGNYGGRGGFGNDNFGGRGGNFGGNR-GGGFGNRSYGGDGFGNDG--GFGGSPPYSGGN 254

Query: 334 TGDNGGWGQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTGGG 212
            G  G  G G GG       G  G G G    G+ G  GGG
Sbjct: 255 RGYGGSQGGGYGGGSQGGGYGGGGQGGGYGGGGQGGGYGGG 295

 Score = 41.2 bits (95), Expect = 0.010
 Identities = 34/104 (32%), Positives = 47/104 (44%), Gaps = 7/104 (6%)
 Frame = -2

Query: 496 SGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWG----GGASTG 329
           SG   GR G  +  G  G  N       N  GR    G +GG+ GG G+G    GG   G
Sbjct: 190 SGSQRGRGGSGNYGGRGGFGN------DNFGGRG---GNFGGNRGG-GFGNRSYGGDGFG 239

Query: 328 DNGGWGQG---SGGDQNDAQEGSSGWGTGTKKAGEDGWTGGGSW 206
           ++GG+G     SGG++        G+G G++  G  G   GG +
Sbjct: 240 NDGGFGGSPPYSGGNRGYGGSQGGGYGGGSQGGGYGGGGQGGGY 283

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,091,866
Number of Sequences: 1393205
Number of extensions: 20355471
Number of successful extensions: 426263
Number of sequences better than 10.0: 9943
Number of HSP's better than 10.0 without gapping: 110517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232208
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MFBL031b09_f BP042798 1 144
2 MPDL016a07_f AV777288 1 590
3 GNLf020b01 BP075916 35 110




Lotus japonicus
Kazusa DNA Research Institute