Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002839A_C01 KMC002839A_c01
(399 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_233930.1| otoferlin [Rattus norvegicus] 34 0.50
ref|XP_144792.3| similar to immunoglobulin light chain variable ... 32 1.5
emb|CAD41126.1| OSJNBa0084K20.6 [Oryza sativa (japonica cultivar... 31 4.2
dbj|BAB93309.1| B1045F02.29 [Oryza sativa (japonica cultivar-gro... 30 5.5
dbj|BAB89083.1| OJ1014_G12.17 [Oryza sativa (japonica cultivar-g... 30 5.5
>ref|XP_233930.1| otoferlin [Rattus norvegicus]
Length = 2065
Score = 33.9 bits (76), Expect = 0.50
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -1
Query: 375 PSFFVWVILASKYLDYKSLPSHDCPFCITCVERGNSILFCTYVHWH*VRLLVASVMMLKD 196
P F+W++ +K + Y +PS D F I E G C V+ L V+
Sbjct: 880 PDVFIWMMSNNKRIAYARVPSKDLLFSIVEEELGKD---CAK-----VKTLFLKVLQGMS 931
Query: 195 LGLG*RGFG 169
LG G RGFG
Sbjct: 932 LGWGKRGFG 940
>ref|XP_144792.3| similar to immunoglobulin light chain variable region [Mus
musculus]
Length = 227
Score = 32.3 bits (72), Expect = 1.5
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = +3
Query: 66 SYLAKEMISSLPI*TRETLWIPEQNEFVVLKPGRAQNPFSPILGLSTS 209
SY +MI SL + LWIP ++ +V+ G NPF+ + S S
Sbjct: 141 SYEVLKMIYSLQLLRMLVLWIPGISKVIVMTQGALSNPFTSVESASIS 188
>emb|CAD41126.1| OSJNBa0084K20.6 [Oryza sativa (japonica cultivar-group)]
Length = 181
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = -1
Query: 369 FFVWVILASK-----YLDYKSLPSH-DCPFCITCVERGNSILF-CTYVHW 241
FF+W + + + + SH CPFC+ ++ N ILF C + W
Sbjct: 57 FFLWFAFQRRCWTADLIQKRGIDSHLGCPFCVQDLDTANHILFDCMFARW 106
>dbj|BAB93309.1| B1045F02.29 [Oryza sativa (japonica cultivar-group)]
gi|21327997|dbj|BAC00585.1| B1151H08.4 [Oryza sativa
(japonica cultivar-group)]
Length = 995
Score = 30.4 bits (67), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -1
Query: 336 LDYKSLPSHDCPFCITCVERGNSILFCTYVH 244
+D +P D PFC C E+G+ L C +V+
Sbjct: 457 VDELPIPEEDVPFCHDCREQGHYALNCPWVY 487
>dbj|BAB89083.1| OJ1014_G12.17 [Oryza sativa (japonica cultivar-group)]
Length = 367
Score = 30.4 bits (67), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -1
Query: 336 LDYKSLPSHDCPFCITCVERGNSILFCTYVH 244
+D +P D PFC C E+G+ L C +V+
Sbjct: 28 VDELPMPEEDVPFCHDCREQGHYALNCPWVY 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,072,418
Number of Sequences: 1393205
Number of extensions: 7016770
Number of successful extensions: 14350
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14348
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
