Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002838A_C01 KMC002838A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188919.1| hypothetical protein; protein id: At3g22800.1 [... 46 2e-04
ref|NP_197706.1| PWWP domain protein; protein id: At5g23150.1, s... 46 3e-04
gb|AAL31655.1|AC079179_10 Unknown protein [Oryza sativa] gi|2004... 45 4e-04
ref|NP_671744.1| SH3 domain binding protein CR16 [Rattus norvegi... 44 0.001
dbj|BAB07956.1| putative extensin-like protein [Oryza sativa (ja... 44 0.001
>ref|NP_188919.1| hypothetical protein; protein id: At3g22800.1 [Arabidopsis
thaliana] gi|9279698|dbj|BAB01255.1| extensin
protein-like [Arabidopsis thaliana]
Length = 470
Score = 46.2 bits (108), Expect = 2e-04
Identities = 20/44 (45%), Positives = 23/44 (51%)
Frame = +1
Query: 205 PLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNFSPY 336
P PP PPPSPP PPPPP + P +P PP+ PY
Sbjct: 411 PSPPPPPPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPPSPQPY 454
Score = 41.2 bits (95), Expect = 0.007
Identities = 20/42 (47%), Positives = 22/42 (51%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNF 327
PP PP PPP PP PPPPP + S P P SPP +
Sbjct: 386 PPPPPPPPPPPPPPPPPPPPPPYVYPSPPPP----PPSPPPY 423
Score = 38.5 bits (88), Expect = 0.048
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPP 321
PP PP PPP PP PPPPP P +P PP
Sbjct: 376 PPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPP 415
Score = 32.7 bits (73), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Frame = +1
Query: 199 HPPLPPSPPP----SPPCSTLPPP 258
+PP PPSP P SPPC+ LP P
Sbjct: 444 YPPPPPSPQPYMYPSPPCNDLPTP 467
Score = 31.6 bits (70), Expect = 5.9
Identities = 15/26 (57%), Positives = 16/26 (60%), Gaps = 4/26 (15%)
Frame = +1
Query: 199 HPPLPPS----PPPSPPCSTLPPPPP 264
+PP PP PPPSPP PPPPP
Sbjct: 425 YPPPPPPYVYPPPPSPP-YVYPPPPP 449
>ref|NP_197706.1| PWWP domain protein; protein id: At5g23150.1, supported by cDNA:
gi_4868119 [Arabidopsis thaliana] gi|25456231|pir||T51947
probable transcription factor HUA2 [imported] -
Arabidopsis thaliana gi|4868120|gb|AAD31171.1| putative
transcription factor [Arabidopsis thaliana]
Length = 1392
Score = 45.8 bits (107), Expect = 3e-04
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +1
Query: 202 PPLPPSPPP-SPPC--STLPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
PPLPPSPPP SPP S+LPPPPP + +P ++ P PP SP
Sbjct: 1073 PPLPPSPPPPSPPLPPSSLPPPPPAALFPPLPPPPSQPP--PPPLSP 1117
Score = 37.4 bits (85), Expect = 0.11
Identities = 21/45 (46%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Frame = +1
Query: 202 PPLPPSP-PPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
PPLPPS PP PP + PP PP P + PLSPP P
Sbjct: 1084 PPLPPSSLPPPPPAALFPPLPP------PPSQPPPPPLSPPPSPP 1122
Score = 35.4 bits (80), Expect = 0.41
Identities = 21/43 (48%), Positives = 24/43 (54%), Gaps = 4/43 (9%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPP----LLTWLSMPEKMNRFPLSP 318
PP P SPPPSPP PPPPP L T LS+ ++ P P
Sbjct: 1111 PPPPLSPPPSPP----PPPPPPSQSLTTQLSIASH-HQIPFQP 1148
Score = 34.7 bits (78), Expect = 0.70
Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +1
Query: 202 PPLPPSP--PPSPPCSTLPPPPP 264
PPLPP P PP PP S P PPP
Sbjct: 1101 PPLPPPPSQPPPPPLSPPPSPPP 1123
>gb|AAL31655.1|AC079179_10 Unknown protein [Oryza sativa] gi|20042881|gb|AAM08709.1|AC116601_2
Unknown protein [Oryza sativa]
Length = 1269
Score = 45.4 bits (106), Expect = 4e-04
Identities = 27/63 (42%), Positives = 32/63 (49%), Gaps = 11/63 (17%)
Frame = +1
Query: 184 LLINRH-PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKM----------NRFPLSPPNFS 330
+L NR PP PP PPP P S LPPPPP S+P ++ N+FP PP
Sbjct: 611 ILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPP 670
Query: 331 PYR 339
P R
Sbjct: 671 PPR 673
Score = 36.2 bits (82), Expect = 0.24
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Frame = +1
Query: 202 PPLPPSPPPSPPC-----STLPPPPPLLTWLSMP 288
PP PP PPP P C PPPPP+L S+P
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVP 618
Score = 36.2 bits (82), Expect = 0.24
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPP 321
PP PP PPP P ++PPPPP P N L PP
Sbjct: 602 PPPPPPPPPILPNRSVPPPPP-----PPPPLPNHSVLPPP 636
Score = 35.4 bits (80), Expect = 0.41
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 184 LLINRHPPLPPSPPPSPPC--STLPPPPPL 267
L+ + P PP PPP P T+PPPPPL
Sbjct: 755 LMTGKKAPAPPPPPPQAPKPPGTVPPPPPL 784
Score = 34.7 bits (78), Expect = 0.70
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 205 PLPPSPPPSPPCST-----LPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
P PP PPP P + PPPPPL+T P P PP +P
Sbjct: 730 PAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPA-----PPPPPPQAP 772
Score = 33.9 bits (76), Expect = 1.2
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = +1
Query: 202 PPLPPSPPP-------SPPCSTLPPPPPLLTWLSMPEKMNRFPLSPP 321
PP PP PPP SPP PPPPP L + P PP
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
Score = 33.1 bits (74), Expect = 2.0
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = +1
Query: 202 PPLPPSPPPSP----PCSTLPPPPP 264
PP PP PPP P P + PPPPP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPP 568
Score = 32.3 bits (72), Expect = 3.5
Identities = 23/58 (39%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTL----------PPPPPLLTWL--SMPEKMNRFPLSPPNFSPYR 339
PP PP PPP PP PPPPPL L S P P PP P R
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPP-----PPPPPPILPNR 615
>ref|NP_671744.1| SH3 domain binding protein CR16 [Rattus norvegicus]
gi|1185397|gb|AAA87791.1| SH3 domain binding protein
gi|1587070|prf||2205340A CR16 gene
Length = 451
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = +1
Query: 196 RHPPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPP 321
R PP PP PPP PP PPPPPL T+ S + P PP
Sbjct: 291 REPPAPPPPPPPPPP---PPPPPLPTYASCSPRAAVAPPPPP 329
Score = 38.5 bits (88), Expect = 0.048
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPP 264
PP PP PPP PP PPPPP
Sbjct: 6 PPPPPLPPPPPPLGAPPPPPP 26
Score = 36.6 bits (83), Expect = 0.18
Identities = 14/22 (63%), Positives = 15/22 (67%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPL 267
PP P +PPP PP PPPPPL
Sbjct: 175 PPPPTTPPPPPPPPPPPPPPPL 196
Score = 36.2 bits (82), Expect = 0.24
Identities = 21/54 (38%), Positives = 22/54 (39%), Gaps = 10/54 (18%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTL----------PPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
PP PP PPP PP T PPPPPL P N +PP P
Sbjct: 299 PPPPPPPPPPPPLPTYASCSPRAAVAPPPPPL------PGSSNSGSETPPPLPP 346
Score = 35.4 bits (80), Expect = 0.41
Identities = 19/42 (45%), Positives = 21/42 (49%), Gaps = 2/42 (4%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPP--PLLTWLSMPEKMNRFPLSPP 321
PP PP+PPP PP S L P L L +P PL PP
Sbjct: 232 PPPPPTPPPLPPASALSEKAVRPQLAPLHLPPIPPPLPLLPP 273
Score = 34.7 bits (78), Expect = 0.70
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPL 267
PP PP PPP PP LPP P+
Sbjct: 181 PPPPPPPPPPPPPPPLPPASPI 202
Score = 34.7 bits (78), Expect = 0.70
Identities = 18/43 (41%), Positives = 21/43 (47%)
Frame = +1
Query: 205 PLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
P PP+ PP PP PPPPP L S P+ P+ SP
Sbjct: 175 PPPPTTPPPPPPPPPPPPPPPLPPAS--------PIKAPSVSP 209
Score = 33.1 bits (74), Expect = 2.0
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 202 PPLPPSPPP--SPPCSTLPPPPP 264
PPLPP PPP +PP PPPPP
Sbjct: 9 PPLPPPPPPLGAPP----PPPPP 27
Score = 32.7 bits (73), Expect = 2.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPP 264
PP P P P PP + PPPPP
Sbjct: 167 PPRPSVPAPPPPTTPPPPPPP 187
>dbj|BAB07956.1| putative extensin-like protein [Oryza sativa (japonica
cultivar-group)] gi|13161443|dbj|BAB33013.1| putative
extensin-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 579
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/51 (47%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFP-LSPPNFSPYRLQRW 351
PP PP+P P PPC LPPPPP P P LSPP PY W
Sbjct: 436 PPPPPAPQPHPPCPELPPPPP-----PPPPCGGATPALSPPPPPPYYPGPW 481
Score = 36.2 bits (82), Expect = 0.24
Identities = 19/44 (43%), Positives = 22/44 (49%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
PP P PPPSPP + PPPP P + P SPP +P
Sbjct: 389 PPPPSPPPPSPPPPSTSPPPP------SPPPPSPPPPSPPPPAP 426
Score = 34.7 bits (78), Expect = 0.70
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTLPPPPPL 267
PP P PPPSPP + PPP P+
Sbjct: 406 PPPPSPPPPSPPPPSPPPPAPI 427
Score = 34.7 bits (78), Expect = 0.70
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = +1
Query: 202 PPLPPS--PPPSPPCSTLPPPPPLLTWLSMPEKMNRFPLSPPNFSP 333
P LPP PPPSPP + PPP P P + P SPP SP
Sbjct: 377 PALPPPSPPPPSPPPPSPPPPSP------PPPSTSPPPPSPPPPSP 416
Score = 31.2 bits (69), Expect = 7.7
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Frame = +1
Query: 202 PPLPPSPPPSPPCSTL----PPPPP 264
PP PP P P PP PPPPP
Sbjct: 413 PPSPPPPSPPPPAPIFHPPQPPPPP 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,699,196
Number of Sequences: 1393205
Number of extensions: 13931095
Number of successful extensions: 293657
Number of sequences better than 10.0: 3413
Number of HSP's better than 10.0 without gapping: 79048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189791
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
