Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002836A_C01 KMC002836A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana] 196 2e-49
ref|NP_177039.1| deaminase, putative; protein id: At1g68720.1 [A... 196 2e-49
ref|NP_296611.1| cytidine/deoxycytidylate deaminase family prote... 90 2e-17
ref|NP_690947.1| hypothetical protein [Oceanobacillus iheyensis ... 89 5e-17
ref|NP_220365.1| cytosine deaminase [Chlamydia trachomatis] gi|7... 89 5e-17
>dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana]
Length = 1307
Score = 196 bits (498), Expect = 2e-49
Identities = 98/146 (67%), Positives = 112/146 (76%)
Frame = -1
Query: 553 CIREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRLF 374
CIRE SK L +WRL++TTLYVTLEPCPMCAGAILQARV+T+VWGAPNKLLGADGSWIRLF
Sbjct: 1164 CIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLF 1223
Query: 373 PDGGQNVSEPRDIQPAPVHPFHPNIKIRRGVLATECANEMQQFFQLRRKKNKEESSKEHS 194
P G N SE + P PVHPFHP + IRRGVL +ECA MQQFFQLRRKK K+++S +
Sbjct: 1224 PGGEGNGSEASEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQLRRKK-KDKNSDPPT 1282
Query: 193 RLAVTHHHPSKLLNKIQDMFHVMFCL 116
HHH KLLNK+ + FCL
Sbjct: 1283 PTDHHHHHLPKLLNKMHQVL-PFFCL 1307
>ref|NP_177039.1| deaminase, putative; protein id: At1g68720.1 [Arabidopsis thaliana]
gi|25404767|pir||G96711 unknown protein, 92941-88668
[imported] - Arabidopsis thaliana
gi|5734706|gb|AAD49971.1|AC008075_4 Contains similarity
to gi|3329316 cytosine deaminase from Chlamydia
trachomatis genome gb|AE001357 and contains a PF|00383
cytidine deaminase zinc-binding region. EST gb|W43306
comes from this gene. [Arabidopsis thaliana]
gi|12324145|gb|AAG52046.1|AC011914_16 unknown protein;
92941-88668 [Arabidopsis thaliana]
Length = 1307
Score = 196 bits (498), Expect = 2e-49
Identities = 98/146 (67%), Positives = 112/146 (76%)
Frame = -1
Query: 553 CIREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRLF 374
CIRE SK L +WRL++TTLYVTLEPCPMCAGAILQARV+T+VWGAPNKLLGADGSWIRLF
Sbjct: 1164 CIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRLF 1223
Query: 373 PDGGQNVSEPRDIQPAPVHPFHPNIKIRRGVLATECANEMQQFFQLRRKKNKEESSKEHS 194
P G N SE + P PVHPFHP + IRRGVL +ECA MQQFFQLRRKK K+++S +
Sbjct: 1224 PGGEGNGSEASEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQLRRKK-KDKNSDPPT 1282
Query: 193 RLAVTHHHPSKLLNKIQDMFHVMFCL 116
HHH KLLNK+ + FCL
Sbjct: 1283 PTDHHHHHLPKLLNKMHQVL-PFFCL 1307
>ref|NP_296611.1| cytidine/deoxycytidylate deaminase family protein [Chlamydia
muridarum] gi|8163170|gb|AAF73539.1|
cytidine/deoxycytidylate deaminase family protein
[Chlamydia muridarum]
Length = 157
Score = 89.7 bits (221), Expect = 2e-17
Identities = 48/114 (42%), Positives = 64/114 (56%)
Frame = -1
Query: 553 CIREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRLF 374
CI A++ L WRL +TTLY TLEPC MCAGAI AR+ +VWGAP+ LGA GSW+ +F
Sbjct: 60 CISAAAEYLQNWRLKDTTLYCTLEPCLMCAGAIQLARIPRIVWGAPDLRLGAGGSWLNVF 119
Query: 373 PDGGQNVSEPRDIQPAPVHPFHPNIKIRRGVLATECANEMQQFFQLRRKKNKEE 212
+ HPFH ++ G+ E M+ FF +RK+ E+
Sbjct: 120 LE---------------KHPFH-QVECCPGICHQESEWLMKNFFWEKRKEKNEK 157
>ref|NP_690947.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22775704|dbj|BAC11982.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 166
Score = 88.6 bits (218), Expect = 5e-17
Identities = 47/118 (39%), Positives = 76/118 (63%), Gaps = 1/118 (0%)
Frame = -1
Query: 550 IREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRLFP 371
++EA+ + +WRL + TLYVTLEPCPMCAGAI+Q+R+ VV+GAP+ G G+ + L
Sbjct: 65 MQEANNEIGSWRLEDCTLYVTLEPCPMCAGAIVQSRMKRVVYGAPDPKAGCAGTIMNL-- 122
Query: 370 DGGQNVSEPRDIQPAPVHPFHPNIKIRRGVLATECANEMQQFF-QLRRKKNKEESSKE 200
++EPR F+ +++ GVL +C+ +++FF +LR KK+K+ S+ +
Sbjct: 123 -----LNEPR---------FNHQVEVTSGVLEQQCSTILKEFFKELREKKSKDISTND 166
>ref|NP_220365.1| cytosine deaminase [Chlamydia trachomatis] gi|7445150|pir||G71463
probable cytosine deaminase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) gi|3329316|gb|AAC68441.1|
cytosine deaminase [Chlamydia trachomatis]
Length = 163
Score = 88.6 bits (218), Expect = 5e-17
Identities = 49/114 (42%), Positives = 64/114 (55%)
Frame = -1
Query: 553 CIREASKLLHTWRLSETTLYVTLEPCPMCAGAILQARVDTVVWGAPNKLLGADGSWIRLF 374
CI A++ L WRL +T LY TLEPC MCAGAI AR+ +VWGAP+ LGA GSW+ +F
Sbjct: 60 CISAAAEYLENWRLKDTILYCTLEPCLMCAGAIQLARIPRIVWGAPDLRLGAGGSWLNVF 119
Query: 373 PDGGQNVSEPRDIQPAPVHPFHPNIKIRRGVLATECANEMQQFFQLRRKKNKEE 212
+ HPFH ++ GV E M+ FF L ++K K+E
Sbjct: 120 LE---------------KHPFH-QVECCSGVCYQESEQLMKNFF-LEKRKAKDE 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,448,677
Number of Sequences: 1393205
Number of extensions: 10989303
Number of successful extensions: 30217
Number of sequences better than 10.0: 254
Number of HSP's better than 10.0 without gapping: 29230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30132
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
