Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002830A_C01 KMC002830A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177421.1| protein phosphatase 2C (AtP2C-HA); protein id: ... 60 1e-08
emb|CAA05875.1| protein phosphatase 2C [Arabidopsis thaliana] 60 1e-08
ref|NP_200515.1| protein phosphatase 2C, ABI2; protein id: At5g5... 59 5e-08
emb|CAA55484.1| ABI1 [Arabidopsis thaliana] 55 4e-07
gb|AAK59578.1| putative protein phosphatase ABI1 [Arabidopsis th... 55 4e-07
>ref|NP_177421.1| protein phosphatase 2C (AtP2C-HA); protein id: At1g72770.1
[Arabidopsis thaliana] gi|25406209|pir||F96752 protein
phosphatase 2C (AtP2C-HA), 19519-17666 [imported] -
Arabidopsis thaliana
gi|12323769|gb|AAG51849.1|AC010926_12 protein
phosphatase 2C (AtP2C-HA); 19519-17666 [Arabidopsis
thaliana]
Length = 511
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/48 (58%), Positives = 39/48 (80%)
Frame = -1
Query: 535 SERGEGVDPAAQAAAEFLSNRALP*GSEDHIPVIVVDLKPPRKYKSET 392
+ERG+G+DPA QAAA++LS AL GS+D+I +IV+DLK RK+K+ T
Sbjct: 464 AERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTRT 511
>emb|CAA05875.1| protein phosphatase 2C [Arabidopsis thaliana]
Length = 511
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/48 (58%), Positives = 39/48 (80%)
Frame = -1
Query: 535 SERGEGVDPAAQAAAEFLSNRALP*GSEDHIPVIVVDLKPPRKYKSET 392
+ERG+G+DPA QAAA++LS AL GS+D+I +IV+DLK RK+K+ T
Sbjct: 464 AERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTRT 511
>ref|NP_200515.1| protein phosphatase 2C, ABI2; protein id: At5g57050.1 [Arabidopsis
thaliana] gi|3914239|sp|O04719|P2C2_ARATH Protein
phosphatase 2C ABI2 (PP2C) (Abscisic acid-insensitive 2)
gi|1945140|emb|CAA70163.1| ABI2 protein phosphatase 2C
[Arabidopsis thaliana] gi|1945142|emb|CAA70162.1| ABI2
protein phosphatase 2C [Arabidopsis thaliana]
gi|2564213|emb|CAA72538.1| ABI2 [Arabidopsis thaliana]
gi|8777445|dbj|BAA97035.1| protein phosphatase 2C ABI2
(PP2C) [Arabidopsis thaliana] gi|22531154|gb|AAM97081.1|
protein phosphatase 2C ABI2 [Arabidopsis thaliana]
Length = 423
Score = 58.5 bits (140), Expect = 5e-08
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = -1
Query: 538 SSERGEGVDPAAQAAAEFLSNRALP*GSEDHIPVIVVDLKPPRKYKSET 392
+ +RGEG DPAA +AAE+LS AL GS+D+I V+VVDLK RK+KS++
Sbjct: 373 AEKRGEGKDPAAMSAAEYLSKMALQKGSKDNISVVVVDLKGIRKFKSKS 421
>emb|CAA55484.1| ABI1 [Arabidopsis thaliana]
Length = 434
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = -1
Query: 529 RGEGVDPAAQAAAEFLSNRALP*GSEDHIPVIVVDLKPPRKYKSE 395
R EG DPAA +AAE+LS A+ GS+D+I V+VVDLKP RK KS+
Sbjct: 387 RKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSK 431
>gb|AAK59578.1| putative protein phosphatase ABI1 [Arabidopsis thaliana]
Length = 434
Score = 55.5 bits (132), Expect = 4e-07
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = -1
Query: 529 RGEGVDPAAQAAAEFLSNRALP*GSEDHIPVIVVDLKPPRKYKSE 395
R EG DPAA +AAE+LS A+ GS+D+I V+VVDLKP RK KS+
Sbjct: 387 RKEGKDPAAMSAAEYLSKLAIQRGSKDNISVVVVDLKPRRKLKSK 431
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,019,904
Number of Sequences: 1393205
Number of extensions: 7921188
Number of successful extensions: 17824
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17821
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
