Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002829A_C01 KMC002829A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_711146.1| exodeoxyribonuclease V, gamma chain [Leptospira... 33 3.3
gb|AAF65553.1|AF249887_1 map kinase kinase [Pneumocystis carinii] 31 9.7
ref|XP_159909.1| hypothetical protein XP_159909 [Mus musculus] 31 9.7
>ref|NP_711146.1| exodeoxyribonuclease V, gamma chain [Leptospira interrogans serovar
lai str. 56601] gi|24194473|gb|AAN48164.1|AE011281_1
exodeoxyribonuclease V, gamma chain [Leptospira
interrogans serovar lai str. 56601]
Length = 1132
Score = 32.7 bits (73), Expect = 3.3
Identities = 15/43 (34%), Positives = 26/43 (59%)
Frame = +3
Query: 69 YKIYLFQPRQPESYKINNVWEIKHVINSTQIW*K**NRLITEY 197
+KIY F+PR E K N+ E ++ I S+ + + +++TEY
Sbjct: 994 FKIYSFKPRPSEESKKKNILEFEYDIKSSSLGMEYLTKIVTEY 1036
>gb|AAF65553.1|AF249887_1 map kinase kinase [Pneumocystis carinii]
Length = 398
Score = 31.2 bits (69), Expect = 9.7
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = -2
Query: 493 PPRWPPRWPVERVTYLVFFLNKFGTKKNDKAGCWKVAW*SWFIQFYKPCQSGSDFFKPKL 314
PP PP P+E + Y+V N + D K+ W F F K C +P
Sbjct: 312 PPEGPPLVPIELLNYIVNISNFELVDEPDN----KIKWSEDFKHFLKTCLERDGAKRPNS 367
Query: 313 V*WLNHPF 290
L HP+
Sbjct: 368 QRMLEHPW 375
>ref|XP_159909.1| hypothetical protein XP_159909 [Mus musculus]
Length = 312
Score = 31.2 bits (69), Expect = 9.7
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = +2
Query: 389 LPTTSFVIFFSSKFVQKKYQISDPLNWPPRRPPWRSSSFWIE 514
L SF + FSS Q SDP+ + P SSSFW+E
Sbjct: 82 LSQNSFPVKFSSSSAQVLTLCSDPVPYCENLVPKESSSFWVE 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,056,481
Number of Sequences: 1393205
Number of extensions: 10642578
Number of successful extensions: 23708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23238
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
