Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002827A_C01 KMC002827A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica ... 155 4e-37
ref|NP_188306.2| unknown protein; protein id: At3g16830.1, suppo... 151 7e-36
dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis tha... 149 3e-35
gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|2882770... 145 3e-34
pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis tha... 145 3e-34
>dbj|BAA84613.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 930
Score = 155 bits (392), Expect = 4e-37
Identities = 78/117 (66%), Positives = 93/117 (78%), Gaps = 5/117 (4%)
Frame = -3
Query: 608 ATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNS-PNVYPVVVTAHPQ 432
A+YS NSQLV+AAFTDGNIG+FD ++LRLRCRIA AYL + NS P+VYP+VV AHPQ
Sbjct: 814 ASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQ 873
Query: 431 EPNQFAVGLSDGSIKVIEPTESEGRWGIKEP----VDNGRTASPSITNNPTPEQLQR 273
E NQFAVGLSDGS+KVIEP ESEG+WG P V NGRT++ S T+NP +Q+QR
Sbjct: 874 ESNQFAVGLSDGSVKVIEPLESEGKWGTTPPTENGVPNGRTSTSSATSNPAADQIQR 930
>ref|NP_188306.2| unknown protein; protein id: At3g16830.1, supported by cDNA:
gi_18377647 [Arabidopsis thaliana]
Length = 1131
Score = 151 bits (381), Expect = 7e-36
Identities = 74/119 (62%), Positives = 90/119 (75%), Gaps = 7/119 (5%)
Frame = -3
Query: 608 ATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSPNVYPVVVTAHPQE 429
A+YSCNSQLVYA+F DGNI VFDA+SLRLRCRIA SAY+ Q + NS ++P V+TAHPQE
Sbjct: 1013 ASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQE 1072
Query: 428 PNQFAVGLSDGSIKVIEPTESEGRWGI-------KEPVDNGRTASPSITNNPTPEQLQR 273
PNQ AVGLSDGS+KVIEP+E RWG+ K +NGR +S S NN + +Q+QR
Sbjct: 1073 PNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
>dbj|BAA95777.1| gene_id:K20I9.6~unknown protein [Arabidopsis thaliana]
Length = 1161
Score = 149 bits (376), Expect = 3e-35
Identities = 73/118 (61%), Positives = 89/118 (74%), Gaps = 7/118 (5%)
Frame = -3
Query: 608 ATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSPNVYPVVVTAHPQE 429
A+YSCNSQLVYA+F DGNI VFDA+SLRLRCRIA SAY+ Q + NS ++P V+TAHPQE
Sbjct: 1013 ASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQE 1072
Query: 428 PNQFAVGLSDGSIKVIEPTESEGRWGI-------KEPVDNGRTASPSITNNPTPEQLQ 276
PNQ AVGLSDGS+KVIEP+E RWG+ K +NGR +S S NN + +Q+Q
Sbjct: 1073 PNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQ 1130
>gb|AAO42071.1| unknown protein [Arabidopsis thaliana] gi|28827708|gb|AAO50698.1|
unknown protein [Arabidopsis thaliana]
Length = 1108
Score = 145 bits (367), Expect = 3e-34
Identities = 72/112 (64%), Positives = 87/112 (77%)
Frame = -3
Query: 608 ATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSPNVYPVVVTAHPQE 429
A Y+CNSQL+Y F DGNIGVFDADSLRLRCRI+ SAYL Q + + P+VV AHPQ+
Sbjct: 1002 AVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPLVVAAHPQD 1058
Query: 428 PNQFAVGLSDGSIKVIEPTESEGRWGIKEPVDNGRTASPSITNNPTPEQLQR 273
PNQFAVGL+DGS+K++EPTE EG+WG+ P + SPS T+N TPEQLQR
Sbjct: 1059 PNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE--AINSPSTTSNQTPEQLQR 1108
>pir||T01778 hypothetical protein A_IG002P16.14 - Arabidopsis thaliana
gi|2191165|gb|AAB61051.1| Hypothetical protein F2P16.14
[Arabidopsis thaliana]
Length = 123
Score = 145 bits (367), Expect = 3e-34
Identities = 72/112 (64%), Positives = 87/112 (77%)
Frame = -3
Query: 608 ATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSPNVYPVVVTAHPQE 429
A Y+CNSQL+Y F DGNIGVFDADSLRLRCRI+ SAYL Q + + P+VV AHPQ+
Sbjct: 17 AVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ---GNQGLSPLVVAAHPQD 73
Query: 428 PNQFAVGLSDGSIKVIEPTESEGRWGIKEPVDNGRTASPSITNNPTPEQLQR 273
PNQFAVGL+DGS+K++EPTE EG+WG+ P + SPS T+N TPEQLQR
Sbjct: 74 PNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSE--AINSPSTTSNQTPEQLQR 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,914,628
Number of Sequences: 1393205
Number of extensions: 9793215
Number of successful extensions: 27025
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27001
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
