Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002826A_C01 KMC002826A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06125 hypothetical protein F23E12.120 - Arabidopsis thalia... 114 8e-25
ref|NP_567982.1| putative protein; protein id: At4g35320.1, supp... 114 8e-25
gb|AAM65760.1| unknown [Arabidopsis thaliana] 111 7e-24
ref|NP_179322.1| unknown protein; protein id: At2g17300.1 [Arabi... 96 4e-19
dbj|BAC57409.1| OSJNBa0016N23.32 [Oryza sativa (japonica cultiva... 86 4e-16
>pir||T06125 hypothetical protein F23E12.120 - Arabidopsis thaliana
gi|3080418|emb|CAA18737.1| putative protein [Arabidopsis
thaliana] gi|7270484|emb|CAB80249.1| putative protein
[Arabidopsis thaliana]
Length = 143
Score = 114 bits (286), Expect = 8e-25
Identities = 56/103 (54%), Positives = 76/103 (73%)
Frame = -1
Query: 613 LRLRLASLNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTWAWILSRKPI 434
+R RL+SL+ S +A+ + FPRSKS+S+MG+ AG+S+ WW+W W+WILSRKPI
Sbjct: 31 IRRRLSSLSLN---LSNQPAAIAARFPRSKSVSAMGEQAGSSVKEWWEWGWSWILSRKPI 87
Query: 433 FARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFIPPTN 305
F RDLELN E K + GS NRG+ HVF+KLRS+IR F+ P++
Sbjct: 88 FIRDLELNKDEAKSI-GSQNRGSIMHVFFKLRSQIRNFMGPSS 129
>ref|NP_567982.1| putative protein; protein id: At4g35320.1, supported by cDNA:
4354., supported by cDNA: gi_13605510, supported by
cDNA: gi_16323283 [Arabidopsis thaliana]
gi|13605511|gb|AAK32749.1|AF361581_1
AT4g35320/F23E12_120 [Arabidopsis thaliana]
gi|16323284|gb|AAL15397.1| AT4g35320/F23E12_120
[Arabidopsis thaliana]
Length = 147
Score = 114 bits (286), Expect = 8e-25
Identities = 56/103 (54%), Positives = 76/103 (73%)
Frame = -1
Query: 613 LRLRLASLNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTWAWILSRKPI 434
+R RL+SL+ S +A+ + FPRSKS+S+MG+ AG+S+ WW+W W+WILSRKPI
Sbjct: 35 IRRRLSSLSLN---LSNQPAAIAARFPRSKSVSAMGEQAGSSVKEWWEWGWSWILSRKPI 91
Query: 433 FARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFIPPTN 305
F RDLELN E K + GS NRG+ HVF+KLRS+IR F+ P++
Sbjct: 92 FIRDLELNKDEAKSI-GSQNRGSIMHVFFKLRSQIRNFMGPSS 133
>gb|AAM65760.1| unknown [Arabidopsis thaliana]
Length = 147
Score = 111 bits (278), Expect = 7e-24
Identities = 55/103 (53%), Positives = 75/103 (72%)
Frame = -1
Query: 613 LRLRLASLNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTWAWILSRKPI 434
+R RL+SL+ S +A+ + F RSKS+S+MG+ AG+S+ WW+W W+WILSRKPI
Sbjct: 35 IRRRLSSLSLN---LSNQPAAIAARFARSKSVSAMGEQAGSSVKEWWEWGWSWILSRKPI 91
Query: 433 FARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFIPPTN 305
F RDLELN E K + GS NRG+ HVF+KLRS+IR F+ P++
Sbjct: 92 FIRDLELNKDEAKSI-GSQNRGSIMHVFFKLRSQIRNFMGPSS 133
>ref|NP_179322.1| unknown protein; protein id: At2g17300.1 [Arabidopsis thaliana]
gi|25341938|pir||E84550 hypothetical protein At2g17300
[imported] - Arabidopsis thaliana
Length = 139
Score = 95.9 bits (237), Expect = 4e-19
Identities = 52/113 (46%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Frame = -1
Query: 637 SVDSSEHGL-RLRLASLNTTPAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTW 461
S + E GL R RL+SL+ + S + RSKS+S MG+ G+S+ WW+W+W
Sbjct: 21 STTTDEPGLLRRRLSSLSLNLSRNQPSTVS------RSKSVSDMGEQGGSSVKEWWEWSW 74
Query: 460 AWILSRK-PIFARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFIPPTN 305
+WIL +K PIF DLE+N ETK G+ RG++ HVF+KLRSEIRR + P++
Sbjct: 75 SWILLKKLPIFFTDLEVNKNETKSSLGNQQRGSFIHVFFKLRSEIRRLLRPSS 127
>dbj|BAC57409.1| OSJNBa0016N23.32 [Oryza sativa (japonica cultivar-group)]
Length = 173
Score = 85.9 bits (211), Expect = 4e-16
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Frame = -1
Query: 616 GLRLRLASLNTT--PAAASASASAVWSSFPRSKSLSSMGDYAGTSI*NWWDWTWAWILSR 443
GLR R++S + P +SA A + S+ ++ AG ++ WW W W+++R
Sbjct: 38 GLRRRMSSFSVRIQPLMSSAGAGGAFRRATSMPSVKALAAQAG-AVRRWWGWGLGWVMNR 96
Query: 442 KPIFARDLELNDQETKLLGGSHNRGTWRHVFYKLRSEIRRFI 317
+P FARDLE+ND E L G H RGTWRHVFY+LR+ RR +
Sbjct: 97 RPAFARDLEMNDDEAAAL-GCHCRGTWRHVFYRLRAGARRLL 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,617,884
Number of Sequences: 1393205
Number of extensions: 13370043
Number of successful extensions: 50344
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 43538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50177
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
