Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002825A_C01 KMC002825A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA21920.1| hypothetical protein [Plasmodium yoelii yoelii] 37 0.13
ref|NP_196641.2| RRM-containing protein; protein id: At5g10800.1... 36 0.28
pir||T50789 hypothetical protein T30N20_70 - Arabidopsis thalian... 36 0.28
ref|NP_498836.1| Putative nuclear protein, with a coiled coil-4 ... 36 0.37
ref|NP_498648.1| RNA recognition motif. and Surp module (109.6 ... 35 0.48
>gb|EAA21920.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 384
Score = 37.4 bits (85), Expect = 0.13
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = -2
Query: 557 RDRHRPKSESRHRD---DHDKDRSRDRRRRAR 471
RDR R +S +R RD D +DRSRDRRRR R
Sbjct: 164 RDRSRDRSRNRSRDRSRDRSRDRSRDRRRRRR 195
Score = 31.2 bits (69), Expect = 9.0
Identities = 17/38 (44%), Positives = 20/38 (51%), Gaps = 9/38 (23%)
Frame = -2
Query: 557 RDRHRPKSESRHRD---------DHDKDRSRDRRRRAR 471
RDR R +S R RD D + RSRDRRRR +
Sbjct: 176 RDRSRDRSRDRSRDRRRRRRRSRDRSRSRSRDRRRRRK 213
>ref|NP_196641.2| RRM-containing protein; protein id: At5g10800.1 [Arabidopsis
thaliana]
Length = 947
Score = 36.2 bits (82), Expect = 0.28
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -2
Query: 551 RHRPKSESRHRDDHDKDRSRDRRRRAR 471
+ R KS SR RDDHD+ R RDR R R
Sbjct: 918 KRRAKSSSRERDDHDRSRERDRDWRRR 944
>pir||T50789 hypothetical protein T30N20_70 - Arabidopsis thaliana
gi|8979714|emb|CAB96835.1| putative protein [Arabidopsis
thaliana]
Length = 957
Score = 36.2 bits (82), Expect = 0.28
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -2
Query: 551 RHRPKSESRHRDDHDKDRSRDRRRRAR 471
+ R KS SR RDDHD+ R RDR R R
Sbjct: 928 KRRAKSSSRERDDHDRSRERDRDWRRR 954
>ref|NP_498836.1| Putative nuclear protein, with a coiled coil-4 domain, nematode
specific [Caenorhabditis elegans]
gi|466076|sp|P34594|YOD2_CAEEL Hypothetical protein
ZC262.2 in chromosome III gi|630748|pir||S44882 ZC262.2
protein - Caenorhabditis elegans
gi|13559789|gb|AAK29991.1| Hypothetical protein ZC262.2a
[Caenorhabditis elegans]
Length = 233
Score = 35.8 bits (81), Expect = 0.37
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 557 RDRHRPKSESRHRDDHDKDRSRDRRRRAR 471
RDRH K+ESR DD D++R RD R R
Sbjct: 52 RDRHPEKNESRRHDDRDQERRRDYGRNDR 80
>ref|NP_498648.1| RNA recognition motif. and Surp module (109.6 kD) [Caenorhabditis
elegans] gi|15150635|gb|AAK85442.1|AC006605_4
Hypothetical protein C07H6.4 [Caenorhabditis elegans]
Length = 933
Score = 35.4 bits (80), Expect = 0.48
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = -2
Query: 557 RDRHRPKSESRHRDDHDKDRSRDRRRRAR 471
RDR R + R RD D+DR RDR RR R
Sbjct: 905 RDRSRDRDRDRDRDRRDRDRDRDRDRRYR 933
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,464,707
Number of Sequences: 1393205
Number of extensions: 10060793
Number of successful extensions: 29757
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 26033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29058
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
