Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002822A_C01 KMC002822A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187991.1| endomembrane protein 70, putative; protein id: ... 170 2e-41
gb|AAO22605.1| putative endomembrane protein 70 [Arabidopsis tha... 158 7e-38
ref|NP_175909.1| endomembrane protein 70, putative; protein id: ... 158 7e-38
ref|NP_196645.1| endomembrane protein 70, putative; protein id: ... 153 2e-36
ref|NP_568465.1| endomembrane protein 70, putative; protein id: ... 152 4e-36
>ref|NP_187991.1| endomembrane protein 70, putative; protein id: At3g13772.1
[Arabidopsis thaliana] gi|9294023|dbj|BAB01926.1|
multispanning membrane protein-like [Arabidopsis
thaliana]
Length = 641
Score = 170 bits (430), Expect = 2e-41
Identities = 78/82 (95%), Positives = 80/82 (97%)
Frame = -3
Query: 634 CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLT 455
CSEDYNWWWRAYLTAGSSA YLFLYSIFYFFTKLEITKLVSG+LYFGYM+I SYAFFVLT
Sbjct: 560 CSEDYNWWWRAYLTAGSSAFYLFLYSIFYFFTKLEITKLVSGMLYFGYMIIISYAFFVLT 619
Query: 454 GTIGFYACFWFVRKIYSSVKID 389
GTIGFYACFWFVRKIYSSVKID
Sbjct: 620 GTIGFYACFWFVRKIYSSVKID 641
>gb|AAO22605.1| putative endomembrane protein 70 [Arabidopsis thaliana]
Length = 325
Score = 158 bits (399), Expect = 7e-38
Identities = 71/82 (86%), Positives = 79/82 (95%)
Frame = -3
Query: 634 CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLT 455
CSEDYNW WRAYLT+GSS+LYLFLYS+FYFFTKLEI+KLVSG+LYFGYM+I SY+FFVLT
Sbjct: 244 CSEDYNWCWRAYLTSGSSSLYLFLYSVFYFFTKLEISKLVSGVLYFGYMIIISYSFFVLT 303
Query: 454 GTIGFYACFWFVRKIYSSVKID 389
G+IGFYAC WFVRKIYSSVKID
Sbjct: 304 GSIGFYACLWFVRKIYSSVKID 325
>ref|NP_175909.1| endomembrane protein 70, putative; protein id: At1g55130.1
[Arabidopsis thaliana] gi|25346716|pir||H96592 probable
multispanning membrane protein, [imported] - Arabidopsis
thaliana gi|12321575|gb|AAG50838.1|AC073944_5
multispanning membrane protein, putative [Arabidopsis
thaliana]
Length = 637
Score = 158 bits (399), Expect = 7e-38
Identities = 71/82 (86%), Positives = 79/82 (95%)
Frame = -3
Query: 634 CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLT 455
CSEDYNW WRAYLT+GSS+LYLFLYS+FYFFTKLEI+KLVSG+LYFGYM+I SY+FFVLT
Sbjct: 556 CSEDYNWCWRAYLTSGSSSLYLFLYSVFYFFTKLEISKLVSGVLYFGYMIIISYSFFVLT 615
Query: 454 GTIGFYACFWFVRKIYSSVKID 389
G+IGFYAC WFVRKIYSSVKID
Sbjct: 616 GSIGFYACLWFVRKIYSSVKID 637
>ref|NP_196645.1| endomembrane protein 70, putative; protein id: At5g10840.1
[Arabidopsis thaliana] gi|11281523|pir||T50793
hypothetical protein T30N20_110 - Arabidopsis thaliana
gi|8979718|emb|CAB96839.1| putative protein [Arabidopsis
thaliana]
Length = 639
Score = 153 bits (387), Expect = 2e-36
Identities = 69/82 (84%), Positives = 75/82 (91%)
Frame = -3
Query: 634 CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLT 455
CSEDY WWWR+YLT+GSSALYLFLY+ FYFFTKL+ITKLVS +LYFGYM+I SYAFFVLT
Sbjct: 558 CSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLQITKLVSAMLYFGYMLIASYAFFVLT 617
Query: 454 GTIGFYACFWFVRKIYSSVKID 389
GTIGFYAC WF R IYSSVKID
Sbjct: 618 GTIGFYACLWFTRLIYSSVKID 639
>ref|NP_568465.1| endomembrane protein 70, putative; protein id: At5g25100.1,
supported by cDNA: gi_13430445 [Arabidopsis thaliana]
gi|13430446|gb|AAK25845.1|AF360135_1 putative
multispanning membrane protein [Arabidopsis thaliana]
Length = 644
Score = 152 bits (384), Expect = 4e-36
Identities = 68/82 (82%), Positives = 75/82 (90%)
Frame = -3
Query: 634 CSEDYNWWWRAYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIGSYAFFVLT 455
CSEDY WWWR+YLT+GSSA+YLFLY+ FYFFTKL+ITKLVS +LYFGYM+I SYAFFVLT
Sbjct: 563 CSEDYLWWWRSYLTSGSSAVYLFLYAAFYFFTKLQITKLVSAMLYFGYMLIASYAFFVLT 622
Query: 454 GTIGFYACFWFVRKIYSSVKID 389
GTIGFYAC WF R IYSSVKID
Sbjct: 623 GTIGFYACLWFTRLIYSSVKID 644
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,542,035
Number of Sequences: 1393205
Number of extensions: 10614198
Number of successful extensions: 30018
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 28783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29966
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
