Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002821A_C01 KMC002821A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O04136|HKL3_MALDO Homeobox protein knotted-1 like 3 (KNAP3) g... 186 4e-46
ref|NP_197904.1| KNAT3 homeodomain protein; protein id: At5g2522... 181 9e-45
gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana] 181 9e-45
gb|AAM53320.1| KNAT3 homeodomain protein [Arabidopsis thaliana] ... 181 9e-45
pir||T02220 homeobox protein NTH23 - common tobacco gi|3116212|d... 179 4e-44
>sp|O04136|HKL3_MALDO Homeobox protein knotted-1 like 3 (KNAP3) gi|7488621|pir||T17010
knotted1-like homeobox protein - apple tree
gi|1946222|emb|CAA96512.1| knotted1-like homeobox
protein [Malus x domestica]
Length = 427
Score = 186 bits (471), Expect = 4e-46
Identities = 87/92 (94%), Positives = 88/92 (95%)
Frame = -1
Query: 698 KHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 519
K GYK KIVDIREEI+RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ
Sbjct: 336 KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 395
Query: 518 LKQINNWFINQRKRNWHSNASTSTALKSKRKR 423
LKQINNWFINQRKRNWHSN STST LKSKRKR
Sbjct: 396 LKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427
>ref|NP_197904.1| KNAT3 homeodomain protein; protein id: At5g25220.1, supported by
cDNA: 21240. [Arabidopsis thaliana]
gi|1346387|sp|P48000|HKL3_ARATH Homeobox protein
knotted-1 like 3 (KNAT3) gi|1045042|emb|CAA63130.1|
KNAT3 homeobox protein [Arabidopsis thaliana]
gi|4063731|gb|AAC98441.1| KNAT3 homeodomain protein
[Arabidopsis thaliana]
Length = 431
Score = 181 bits (459), Expect = 9e-45
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = -1
Query: 698 KHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 519
K GYK KIVDIREEI+RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ
Sbjct: 328 KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 387
Query: 518 LKQINNWFINQRKRNWHSNASTSTALKSKRK 426
LKQINNWFINQRKRNWHSN S+ST LK+KRK
Sbjct: 388 LKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418
>gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana]
Length = 431
Score = 181 bits (459), Expect = 9e-45
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = -1
Query: 698 KHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 519
K GYK KIVDIREEI+RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ
Sbjct: 328 KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 387
Query: 518 LKQINNWFINQRKRNWHSNASTSTALKSKRK 426
LKQINNWFINQRKRNWHSN S+ST LK+KRK
Sbjct: 388 LKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418
>gb|AAM53320.1| KNAT3 homeodomain protein [Arabidopsis thaliana]
gi|23197862|gb|AAN15458.1| KNAT3 homeodomain protein
[Arabidopsis thaliana]
Length = 306
Score = 181 bits (459), Expect = 9e-45
Identities = 84/91 (92%), Positives = 87/91 (95%)
Frame = -1
Query: 698 KHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 519
K GYK KIVDIREEI+RKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ
Sbjct: 203 KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 262
Query: 518 LKQINNWFINQRKRNWHSNASTSTALKSKRK 426
LKQINNWFINQRKRNWHSN S+ST LK+KRK
Sbjct: 263 LKQINNWFINQRKRNWHSNPSSSTVLKNKRK 293
>pir||T02220 homeobox protein NTH23 - common tobacco gi|3116212|dbj|BAA25921.1|
homeobox gene [Nicotiana tabacum]
Length = 422
Score = 179 bits (453), Expect = 4e-44
Identities = 82/92 (89%), Positives = 88/92 (95%)
Frame = -1
Query: 698 KHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQ 519
K GYK K+VDIREEI+RKRRAGKLPGDTTSVLKAWWQSH+KWPYPTEEDKA+LVQETGLQ
Sbjct: 331 KQGYKEKLVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKAKLVQETGLQ 390
Query: 518 LKQINNWFINQRKRNWHSNASTSTALKSKRKR 423
LKQINNWFINQRKR+WHSNAS+ST KSKRKR
Sbjct: 391 LKQINNWFINQRKRDWHSNASSSTTSKSKRKR 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,397,047
Number of Sequences: 1393205
Number of extensions: 12214730
Number of successful extensions: 31798
Number of sequences better than 10.0: 686
Number of HSP's better than 10.0 without gapping: 30572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31766
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
