Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002819A_C01 KMC002819A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568663.1| putative protein; protein id: At5g46420.1, supp... 74 1e-12
dbj|BAB10810.1| gene_id:K11I1.1~similar to unknown protein~sp|P7... 74 1e-12
ref|NP_784659.1| integrase [Lactobacillus plantarum WCFS1] gi|28... 33 2.8
gb|AAO51980.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 32 6.3
pir||C86414 F28N24.13 protein - Arabidopsis thaliana gi|9502435|... 32 8.3
>ref|NP_568663.1| putative protein; protein id: At5g46420.1, supported by cDNA:
gi_15292692 [Arabidopsis thaliana]
gi|15292693|gb|AAK92715.1| unknown protein [Arabidopsis
thaliana] gi|20465803|gb|AAM20390.1| unknown protein
[Arabidopsis thaliana]
Length = 352
Score = 74.3 bits (181), Expect = 1e-12
Identities = 40/103 (38%), Positives = 67/103 (64%), Gaps = 1/103 (0%)
Frame = -1
Query: 575 NSLLLGLVSSRTAKIGIQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSY 396
N +L+G VS+R A+IGIQ++ ++L +N +M SM F+K+L K++F+A K NS+
Sbjct: 253 NPMLVGFVSARGAEIGIQVTEE-SEL-KNLEMTFSMKFLKRL---KGKIEFEAVMKMNSH 307
Query: 395 VEKVDKDWVTVTSTTPNSYELSCSIYNSLNLCSLD-QVCMVQV 270
V+ V+K+WV + PNS+E IY L+ CS ++C++ +
Sbjct: 308 VQNVEKEWVESVPSEPNSFEFRSDIYRVLSECSSSAKICLMNI 350
>dbj|BAB10810.1| gene_id:K11I1.1~similar to unknown protein~sp|P74035 [Arabidopsis
thaliana]
Length = 653
Score = 74.3 bits (181), Expect = 1e-12
Identities = 40/103 (38%), Positives = 67/103 (64%), Gaps = 1/103 (0%)
Frame = -1
Query: 575 NSLLLGLVSSRTAKIGIQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSY 396
N +L+G VS+R A+IGIQ++ ++L +N +M SM F+K+L K++F+A K NS+
Sbjct: 554 NPMLVGFVSARGAEIGIQVTEE-SEL-KNLEMTFSMKFLKRL---KGKIEFEAVMKMNSH 608
Query: 395 VEKVDKDWVTVTSTTPNSYELSCSIYNSLNLCSLD-QVCMVQV 270
V+ V+K+WV + PNS+E IY L+ CS ++C++ +
Sbjct: 609 VQNVEKEWVESVPSEPNSFEFRSDIYRVLSECSSSAKICLMNI 651
>ref|NP_784659.1| integrase [Lactobacillus plantarum WCFS1]
gi|28270600|emb|CAD63504.1| integrase [Lactobacillus
plantarum WCFS1]
Length = 305
Score = 33.1 bits (74), Expect = 2.8
Identities = 28/95 (29%), Positives = 41/95 (42%), Gaps = 9/95 (9%)
Frame = -1
Query: 539 AKIGIQISPTIADLDENFDMI-LSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDKDWVTV 363
AK GI+ + + ++FD ++ K +SNK F T K NS V KV DW TV
Sbjct: 142 AKTGIRFAEALGVTPDDFDFAHQTLSISKTWDYKSNKSDFAPT-KNNSSVRKVPLDWQTV 200
Query: 362 ------TSTTPNSYEL--SCSIYNSLNLCSLDQVC 282
T P + +YN L+++C
Sbjct: 201 IQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLC 235
>gb|AAO51980.1| similar to Arabidopsis thaliana (Mouse-ear cress). SMC3 protein
[Dictyostelium discoideum]
Length = 1418
Score = 32.0 bits (71), Expect = 6.3
Identities = 28/109 (25%), Positives = 48/109 (43%), Gaps = 10/109 (9%)
Frame = -1
Query: 602 CPNERISGGNSLLLGLVS----SRTAKIGIQISPTI-ADLDENFDMILSMDFVKKLTKQS 438
C ++SGG L+ L RT + I A LD N+ + +S K + K S
Sbjct: 1074 CSMRQLSGGQKTLVALALIFALQRTDPAPFYLLDEIDAALDHNYRVAVS----KMIRKHS 1129
Query: 437 NKLQFDATPKTNSYVEKVDKDWVTV-----TSTTPNSYELSCSIYNSLN 306
++QF AT +V +++W+ V + P S E + ++ L+
Sbjct: 1130 REIQFIATTFGPEFVMDANQNWIVVFNKGGSKLVPGSTEDALNVIKQLD 1178
>pir||C86414 F28N24.13 protein - Arabidopsis thaliana
gi|9502435|gb|AAF88134.1|AC021043_27 Hypothetical
protein [Arabidopsis thaliana]
Length = 622
Score = 31.6 bits (70), Expect = 8.3
Identities = 27/122 (22%), Positives = 48/122 (39%)
Frame = -1
Query: 527 IQISPTIADLDENFDMILSMDFVKKLTKQSNKLQFDATPKTNSYVEKVDKDWVTVTSTTP 348
I ++ + LD + D+ L + ++ + + D+ PK + + + + T +
Sbjct: 9 ISLATQLISLDNSSDLELVSCTIIQIISLVSSMDLDSQPKPETKLMSL----IAQTISLF 64
Query: 347 NSYELSCSIYNSLNLCSLDQVCMVQVRE*YDKLH*FSDEIELQNVYDGTKEPKPRKKDMH 168
NS +L NL SL + E+ LQN D EPKP + M
Sbjct: 65 NSMDLDSQPEPLRNLISL-----------------ITQELSLQNSIDSDSEPKPNSQVMS 107
Query: 167 IY 162
+Y
Sbjct: 108 LY 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,095,314
Number of Sequences: 1393205
Number of extensions: 10449594
Number of successful extensions: 28689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28680
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
