Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002817A_C01 KMC002817A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564962.1| expressed protein; protein id: At1g69360.1, sup... 91 7e-18
gb|AAL24136.1| unknown protein [Arabidopsis thaliana] 91 7e-18
gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidop... 91 7e-18
pir||E86272 F7A19.3 protein - Arabidopsis thaliana gi|5080770|gb... 74 9e-13
ref|NP_172847.1| hypothetical protein; protein id: At1g13940.1 [... 74 9e-13
>ref|NP_564962.1| expressed protein; protein id: At1g69360.1, supported by cDNA:
gi_16604686 [Arabidopsis thaliana]
Length = 896
Score = 91.3 bits (225), Expect = 7e-18
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = -3
Query: 553 QTFGGIMRAAAHSWNSGLTRRTSSRNGSGRGRRRAQVAPSPPTPPPA-PTNETSTPLMQQ 377
Q FGG+M+A ++WNSG+ RR+S+R GR R + + +P A P N +S +
Sbjct: 809 QMFGGLMKATGYNWNSGMARRSSNR---GRKRLVSNIDRAPVCSSLAQPMNNSSVQM--- 862
Query: 376 LNNIEVGLEDRSLTGWGKTTRRPRRQRCPAGNPPLIPLT 260
VGLEDRSLTGWG TRRPRR RCPAG PP + LT
Sbjct: 863 -----VGLEDRSLTGWGNATRRPRRHRCPAGTPPTVLLT 896
>gb|AAL24136.1| unknown protein [Arabidopsis thaliana]
Length = 896
Score = 91.3 bits (225), Expect = 7e-18
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = -3
Query: 553 QTFGGIMRAAAHSWNSGLTRRTSSRNGSGRGRRRAQVAPSPPTPPPA-PTNETSTPLMQQ 377
Q FGG+M+A ++WNSG+ RR+S+R GR R + + +P A P N +S +
Sbjct: 809 QMFGGLMKATGYNWNSGMARRSSNR---GRKRLVSNIDRAPVCSSLAQPMNNSSVQM--- 862
Query: 376 LNNIEVGLEDRSLTGWGKTTRRPRRQRCPAGNPPLIPLT 260
VGLEDRSLTGWG TRRPRR RCPAG PP + LT
Sbjct: 863 -----VGLEDRSLTGWGNATRRPRRHRCPAGTPPTVLLT 896
>gb|AAG52500.1|AC018364_18 unknown protein; 21446-24388 [Arabidopsis thaliana]
gi|12597788|gb|AAG60100.1|AC073178_11 unknown protein
[Arabidopsis thaliana]
Length = 910
Score = 91.3 bits (225), Expect = 7e-18
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = -3
Query: 553 QTFGGIMRAAAHSWNSGLTRRTSSRNGSGRGRRRAQVAPSPPTPPPA-PTNETSTPLMQQ 377
Q FGG+M+A ++WNSG+ RR+S+R GR R + + +P A P N +S +
Sbjct: 823 QMFGGLMKATGYNWNSGMARRSSNR---GRKRLVSNIDRAPVCSSLAQPMNNSSVQM--- 876
Query: 376 LNNIEVGLEDRSLTGWGKTTRRPRRQRCPAGNPPLIPLT 260
VGLEDRSLTGWG TRRPRR RCPAG PP + LT
Sbjct: 877 -----VGLEDRSLTGWGNATRRPRRHRCPAGTPPTVLLT 910
>pir||E86272 F7A19.3 protein - Arabidopsis thaliana
gi|5080770|gb|AAD39280.1|AC007576_3 Hypothetical protein
[Arabidopsis thaliana]
Length = 990
Score = 74.3 bits (181), Expect = 9e-13
Identities = 46/99 (46%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Frame = -3
Query: 553 QTFGGIMRAAAHSWN-SGLTRRTSSRNGSGRGRRRAQVAPSPPTPPPAPTNETSTPLMQQ 377
Q F G MRA SW +GLTR+ + GS RRA P+ P P P P +QQ
Sbjct: 877 QMFDGFMRATGRSWTPTGLTRK---KTGSRGRPRRAITIPAEPVYCPVPAPAPPPPSVQQ 933
Query: 376 -----LNN--IEVGLEDRSLTGWGKTTRRPRRQRCPAGN 281
NN E+ LEDRS GWGK TRRPRRQRCP+ +
Sbjct: 934 HVSNQSNNGETEMCLEDRSFAGWGKMTRRPRRQRCPSAS 972
>ref|NP_172847.1| hypothetical protein; protein id: At1g13940.1 [Arabidopsis thaliana]
gi|8778405|gb|AAF79413.1|AC068197_23 F16A14.15
[Arabidopsis thaliana]
Length = 1005
Score = 74.3 bits (181), Expect = 9e-13
Identities = 46/99 (46%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Frame = -3
Query: 553 QTFGGIMRAAAHSWN-SGLTRRTSSRNGSGRGRRRAQVAPSPPTPPPAPTNETSTPLMQQ 377
Q F G MRA SW +GLTR+ + GS RRA P+ P P P P +QQ
Sbjct: 892 QMFDGFMRATGRSWTPTGLTRK---KTGSRGRPRRAITIPAEPVYCPVPAPAPPPPSVQQ 948
Query: 376 -----LNN--IEVGLEDRSLTGWGKTTRRPRRQRCPAGN 281
NN E+ LEDRS GWGK TRRPRRQRCP+ +
Sbjct: 949 HVSNQSNNGETEMCLEDRSFAGWGKMTRRPRRQRCPSAS 987
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,923,467
Number of Sequences: 1393205
Number of extensions: 12892449
Number of successful extensions: 89147
Number of sequences better than 10.0: 359
Number of HSP's better than 10.0 without gapping: 63020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83920
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
