Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002816A_C01 KMC002816A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK27720.1|AF356004_1 ADP-glucose pyrophosphorylase small sub... 224 6e-58
gb|AAK27721.2|AF356005_1 ADP-glucose pyrophosphorylase small sub... 223 1e-57
emb|CAA65540.1| ADP-glucose pyrophosphorylase [Pisum sativum] 222 3e-57
emb|CAA65539.1| ADP-glucose pyrophosphorylase [Pisum sativum] 222 3e-57
sp|P52416|GLGS_VICFA Glucose-1-phosphate adenylyltransferase sma... 221 5e-57
>gb|AAK27720.1|AF356004_1 ADP-glucose pyrophosphorylase small subunit CagpS1 [Cicer
arietinum]
Length = 516
Score = 224 bits (571), Expect = 6e-58
Identities = 110/117 (94%), Positives = 116/117 (99%)
Frame = -2
Query: 560 EGCVIKNCKIHHSVVGLRSCVSEGAITEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 381
EGCVIKNCKIHHSVVGLRSC+SEGAI EDTLLMGADYYETDAD+RFLAAKGSVPIGIG+N
Sbjct: 400 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 459
Query: 380 SHIKRAIIDKNARIGENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 210
SHI+RAIIDKNARIG+NVKIIN+DNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI
Sbjct: 460 SHIRRAIIDKNARIGDNVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 516
>gb|AAK27721.2|AF356005_1 ADP-glucose pyrophosphorylase small subunit CagpS2 [Cicer
arietinum]
Length = 505
Score = 223 bits (569), Expect = 1e-57
Identities = 110/117 (94%), Positives = 115/117 (98%)
Frame = -2
Query: 560 EGCVIKNCKIHHSVVGLRSCVSEGAITEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 381
EGCVIKNCKI HSV+GLRSC+SEGAI EDTLLMGADYYETDADKRFLAAKGSVPIGIGRN
Sbjct: 389 EGCVIKNCKIFHSVIGLRSCISEGAIIEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 448
Query: 380 SHIKRAIIDKNARIGENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 210
SHIKRAI+DKNARIGENVKIIN+DNVQEAARET+GYFIKSGIVTVIKDALIPSGTVI
Sbjct: 449 SHIKRAIVDKNARIGENVKIINSDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI 505
>emb|CAA65540.1| ADP-glucose pyrophosphorylase [Pisum sativum]
Length = 507
Score = 222 bits (565), Expect = 3e-57
Identities = 109/117 (93%), Positives = 115/117 (98%)
Frame = -2
Query: 560 EGCVIKNCKIHHSVVGLRSCVSEGAITEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 381
EGCVIKNCKI HSVVGLRSC+SEGAI EDTLLMGADYYET+ADKRFLAAKGSVPIGIG+N
Sbjct: 391 EGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKN 450
Query: 380 SHIKRAIIDKNARIGENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 210
SHIKRAI+DKNARIGENVKIIN+DNVQEAARETEGYFIKSGIVT+IKDALIPSGTVI
Sbjct: 451 SHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVI 507
>emb|CAA65539.1| ADP-glucose pyrophosphorylase [Pisum sativum]
Length = 516
Score = 222 bits (565), Expect = 3e-57
Identities = 109/117 (93%), Positives = 115/117 (98%)
Frame = -2
Query: 560 EGCVIKNCKIHHSVVGLRSCVSEGAITEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 381
EGCVIKNCKIHHSVVGLRSC+SEGAI EDTLLMGADYYETDAD+RFLAAKG VPIGIG+N
Sbjct: 400 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKN 459
Query: 380 SHIKRAIIDKNARIGENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 210
SHIKRAIIDKNARIG++VKIIN+DNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI
Sbjct: 460 SHIKRAIIDKNARIGDDVKIINSDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 516
>sp|P52416|GLGS_VICFA Glucose-1-phosphate adenylyltransferase small subunit 1,
chloroplast precursor (ADP-glucose synthase)
(ADP-glucose pyrophosphorylase) (AGPASE B)
(Alpha-D-glucose-1-phosphate adenyl transferase)
gi|541977|pir||S41293 glucose-1-phosphate
adenylyltransferase (EC 2.7.7.27) - fava bean
gi|440593|emb|CAA54259.1| ADP-glucose pyrophosphorylase
[Vicia faba]
Length = 508
Score = 221 bits (563), Expect = 5e-57
Identities = 108/117 (92%), Positives = 115/117 (97%)
Frame = -2
Query: 560 EGCVIKNCKIHHSVVGLRSCVSEGAITEDTLLMGADYYETDADKRFLAAKGSVPIGIGRN 381
EGCVIKNCKI HSVVGLRSC+SEGAI EDTLLMGADYYET+ADKRFLAAKGSVPIGIG+N
Sbjct: 392 EGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKN 451
Query: 380 SHIKRAIIDKNARIGENVKIINTDNVQEAARETEGYFIKSGIVTVIKDALIPSGTVI 210
SHIKRAI+DKNARIGENVKIIN+DNVQEAARETEGYFIKSGIVT+IKDALIPSGTV+
Sbjct: 452 SHIKRAIVDKNARIGENVKIINSDNVQEAARETEGYFIKSGIVTIIKDALIPSGTVL 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,205,079
Number of Sequences: 1393205
Number of extensions: 10892656
Number of successful extensions: 30296
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 29314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30241
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
