Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002812A_C01 KMC002812A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF27020.1|AC009177_10 putative serine/threonine protein kina... 32 3.8
ref|NP_187165.2| putative serine/threonine protein kinase; prote... 32 3.8
emb|CAC69140.1| hypothetical protein [Pichia anomala] 32 4.9
gb|AAK68638.1| aryl hydrocarbon receptor nuclear translocator Ar... 32 6.4
emb|CAC37219.1| C2 domain protein [Leishmania major] 31 8.4
>gb|AAF27020.1|AC009177_10 putative serine/threonine protein kinase [Arabidopsis thaliana]
Length = 476
Score = 32.3 bits (72), Expect = 3.8
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +2
Query: 167 LSVTCAIQRGKGNLLRPRIHQVILIMLNYHDISVTPK 277
L+ T ++ + +LLRPR+ QV+ ++L + D+ +TP+
Sbjct: 400 LTSTASLCIDQSSLLRPRMSQVVELLLGHEDVVMTPR 436
>ref|NP_187165.2| putative serine/threonine protein kinase; protein id: At3g05140.1,
supported by cDNA: gi_19698986 [Arabidopsis thaliana]
gi|19698987|gb|AAL91229.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
gi|22136306|gb|AAM91231.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
Length = 460
Score = 32.3 bits (72), Expect = 3.8
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +2
Query: 167 LSVTCAIQRGKGNLLRPRIHQVILIMLNYHDISVTPK 277
L+ T ++ + +LLRPR+ QV+ ++L + D+ +TP+
Sbjct: 384 LTSTASLCIDQSSLLRPRMSQVVELLLGHEDVVMTPR 420
>emb|CAC69140.1| hypothetical protein [Pichia anomala]
Length = 489
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/43 (34%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Frame = -1
Query: 375 SCTPGCTSVLLLDLLL---LSCSSMVHCMSPEVESPLGVTLIS 256
S T C S++ LD LL L CS++ HCM +++ + +I+
Sbjct: 426 STTGNCVSLVFLDQLLSIRLQCSTVTHCMEGDLDQKRSLIIIN 468
>gb|AAK68638.1| aryl hydrocarbon receptor nuclear translocator Arnt [Xenopus
laevis]
Length = 713
Score = 31.6 bits (70), Expect = 6.4
Identities = 15/43 (34%), Positives = 28/43 (64%)
Frame = -1
Query: 183 AHVTDNVHHSSVFPSNDLLTFIGDLTSTYYVFDFAILSLLRLY 55
+HV+ + S VFP D+L+ +GD TS+Y +F+ L++ + +
Sbjct: 671 SHVSQQSNQSDVFP--DMLSMLGDQTSSYSNEEFSELNMFQSF 711
>emb|CAC37219.1| C2 domain protein [Leishmania major]
Length = 288
Score = 31.2 bits (69), Expect = 8.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 432 GKPDSYVSLKSGNS*KRLLSSEFEYEIHAVESLVD 536
GKPD YV +K GNS K S+ +Y+ H E+ ++
Sbjct: 21 GKPDPYVKVKLGNSKK----SQIKYKTHVAENCLN 51
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,307,550
Number of Sequences: 1393205
Number of extensions: 8524603
Number of successful extensions: 18500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18497
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
